Click here to switch to the map view.

The map label for this gene is 220932357

Identifier: 220932357

GI number: 220932357

Start: 1625089

End: 1626066

Strand: Reverse

Name: 220932357

Synonym: Hore_15210

Alternate gene names: NA

Gene position: 1626066-1625089 (Counterclockwise)

Preceding gene: 220932358

Following gene: 220932356

Centisome position: 63.07

GC content: 31.8

Gene sequence:

>978_bases
ATGCAGTTGGTTATCAACACATACGGTAGTTACCTTCATGTAAAACAAAAATCGTTTGAAATAAAGACTGAAGAGGATAA
AAAGAGGGTTTCTGCTAAAAAGGTTAGTTCAATATTAATTACCACAGGTGCTGCCATCAGTACAGATGCAGTTAAACTGG
CCCTGGAAAATAATATTGAAATACAGTTTCTGGATGAGTTTGGTTGTTCGTTAGGAAAAGTCTGGCACCCTAAACTTGGT
AGTACTACTTATATTAGAAGGAAACAGCTTGAGCTGGCAGAAAGTGAAGAAGGTACTGAACTGGTAAAAGAATTTATGCT
TGATAAAATAGATAATATGATTAACCATTTACATGATCTGGCTATAAAACGTTCTAAATCAAAAGAGAAATATATAAATA
AGAAGATAAAAGAGATCTGTGAATTGCGTAATAAATTAGAAAAAGTTACAGGGTATATTGAAGATGTAAGAAATACTATA
ATGGGGTATGAAGGTAATATATCCAGGAAGTATTTTGCCAGCTTAAGTTTTCTTTTGCCAGATAGATATAAGTTTAATGG
CAGGAGTTTCAGACCTGCTGAGGATGAATTTAATTGTTTGCTGAATTATGGTTATGGTGTATTATATGGCAAAGTAGAAA
AAGCATTAATTATTGCAGGGTTAGATCCTTATGTTGGCATTCTACATACTGATGGTTATAATAAAAAGTCTTTTGTCTTT
GATTTTATTGAACCCTACCGACACCATATAGACAGAGTAGTAATGAAGTTATTTAGTAGAAAAAAAATCCGTAAGTTACA
TTTTGATAAAATTCAGGGAGGATTAACTCTTAACGATGAAGGAAAAAAATTGCTTCTTACAGAATTAAATGATTATTTTG
ATAAAAAAATTAGATATAAGGGGAGAGAGATAAAAATTAATAATACGATTCAGTATGATTGTCACTCCCTGGCCAACAGA
ATTATAGAGGAAGGTTGA

Upstream 100 bases:

>100_bases
TTGTATGATGATAATATTGGTTTTCTTAAAGAACCTAAAAAAAAGTTTGAATCAACTATGTTTGCTTAATATATATGGTT
TAGTTTGAGGTGATAGATTG

Downstream 100 bases:

>100_bases
TAATATGTTGGTTTGGTTTATTTATGATATTGTTGAAGATAAGCCACGCAAGAAAATAGCAGATAAGGCCATTGAACAGG
GTTTATACAGGGTACAAAAA

Product: CRISPR-associated protein Cas1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MQLVINTYGSYLHVKQKSFEIKTEEDKKRVSAKKVSSILITTGAAISTDAVKLALENNIEIQFLDEFGCSLGKVWHPKLG
STTYIRRKQLELAESEEGTELVKEFMLDKIDNMINHLHDLAIKRSKSKEKYINKKIKEICELRNKLEKVTGYIEDVRNTI
MGYEGNISRKYFASLSFLLPDRYKFNGRSFRPAEDEFNCLLNYGYGVLYGKVEKALIIAGLDPYVGILHTDGYNKKSFVF
DFIEPYRHHIDRVVMKLFSRKKIRKLHFDKIQGGLTLNDEGKKLLLTELNDYFDKKIRYKGREIKINNTIQYDCHSLANR
IIEEG

Sequences:

>Translated_325_residues
MQLVINTYGSYLHVKQKSFEIKTEEDKKRVSAKKVSSILITTGAAISTDAVKLALENNIEIQFLDEFGCSLGKVWHPKLG
STTYIRRKQLELAESEEGTELVKEFMLDKIDNMINHLHDLAIKRSKSKEKYINKKIKEICELRNKLEKVTGYIEDVRNTI
MGYEGNISRKYFASLSFLLPDRYKFNGRSFRPAEDEFNCLLNYGYGVLYGKVEKALIIAGLDPYVGILHTDGYNKKSFVF
DFIEPYRHHIDRVVMKLFSRKKIRKLHFDKIQGGLTLNDEGKKLLLTELNDYFDKKIRYKGREIKINNTIQYDCHSLANR
IIEEG
>Mature_325_residues
MQLVINTYGSYLHVKQKSFEIKTEEDKKRVSAKKVSSILITTGAAISTDAVKLALENNIEIQFLDEFGCSLGKVWHPKLG
STTYIRRKQLELAESEEGTELVKEFMLDKIDNMINHLHDLAIKRSKSKEKYINKKIKEICELRNKLEKVTGYIEDVRNTI
MGYEGNISRKYFASLSFLLPDRYKFNGRSFRPAEDEFNCLLNYGYGVLYGKVEKALIIAGLDPYVGILHTDGYNKKSFVF
DFIEPYRHHIDRVVMKLFSRKKIRKLHFDKIQGGLTLNDEGKKLLLTELNDYFDKKIRYKGREIKINNTIQYDCHSLANR
IIEEG

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019858 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 37772; Mature: 37772

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVINTYGSYLHVKQKSFEIKTEEDKKRVSAKKVSSILITTGAAISTDAVKLALENNIE
CEEEEECCCCEEEEECCCEEECCCHHHHHHHHHHHHHHEEECCCEECHHHEEEEECCCCE
IQFLDEFGCSLGKVWHPKLGSTTYIRRKQLELAESEEGTELVKEFMLDKIDNMINHLHDL
EEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AIKRSKSKEKYINKKIKEICELRNKLEKVTGYIEDVRNTIMGYEGNISRKYFASLSFLLP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
DRYKFNGRSFRPAEDEFNCLLNYGYGVLYGKVEKALIIAGLDPYVGILHTDGYNKKSFVF
CCEECCCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCHHHH
DFIEPYRHHIDRVVMKLFSRKKIRKLHFDKIQGGLTLNDEGKKLLLTELNDYFDKKIRYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHHHHHHHHHCC
GREIKINNTIQYDCHSLANRIIEEG
CCEEEECCCEEHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLVINTYGSYLHVKQKSFEIKTEEDKKRVSAKKVSSILITTGAAISTDAVKLALENNIE
CEEEEECCCCEEEEECCCEEECCCHHHHHHHHHHHHHHEEECCCEECHHHEEEEECCCCE
IQFLDEFGCSLGKVWHPKLGSTTYIRRKQLELAESEEGTELVKEFMLDKIDNMINHLHDL
EEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AIKRSKSKEKYINKKIKEICELRNKLEKVTGYIEDVRNTIMGYEGNISRKYFASLSFLLP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
DRYKFNGRSFRPAEDEFNCLLNYGYGVLYGKVEKALIIAGLDPYVGILHTDGYNKKSFVF
CCEECCCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCHHHH
DFIEPYRHHIDRVVMKLFSRKKIRKLHFDKIQGGLTLNDEGKKLLLTELNDYFDKKIRYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHHHHHHHHHCC
GREIKINNTIQYDCHSLANRIIEEG
CCEEEECCCEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]