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The map label for this gene is rnfC [H]

Identifier: 220932271

GI number: 220932271

Start: 1520333

End: 1521658

Strand: Reverse

Name: rnfC [H]

Synonym: Hore_14350

Alternate gene names: 220932271

Gene position: 1521658-1520333 (Counterclockwise)

Preceding gene: 220932272

Following gene: 220932270

Centisome position: 59.02

GC content: 44.12

Gene sequence:

>1326_bases
GTGGGTGCACTAACATTCAGGCAGGGAGTCCATCCTGAGTATAACAAAGAGCTTACCAGAGATAAGCCATTAAAAAAAGC
AGCACGACCCGGTAAGGTGGTAATACCCCTTCAACAGCATATTGGGGCCCCCTGTGATCCTTTGGTAAAAAAAGGTGATC
AGGTCAAACTGGGTCAAAAAATCGGGGATACTGATGCTTTTGTATCAGCTCCTGTTCATGCCTCGGTTTCTGGTACTGTT
AAAGATATAACTGATGTTTTAACCCCAAGTGGTAAAAAGTCCAGGGCCGTTGTAATTGAAGCTGATGAAGAGGATGTTCT
TGATGAGAGTATCAAACCCCGGGGTGAATTAAGTGATTTAACCCCTGAAGACATTAAAAACATTATAAGAGAGGCGGGGA
TTGTTGGTTTAGGTGGGGCTACTTTTCCTACCCATGTTAAGCTTAATGTCCCCGAAGGCAAAGAAATTGATCATGTTATT
CTTAATGGTGCTGAGTGTGAACCTTATCTAACAGTTGACCACCGGATTATGGTGGAAAGGTCTGAAGATGTTGTCTTTGG
CCTCAGGGCTTTGATGAAGGCCGCCGGGGTAGAGAATGGACTTATTGGAATTGAAGATAATAAACCTGACGCCATCCAGG
CTATGAAAAAGGTGGTAGAAAATGAACCGGGGATTGAAGTTAAGGTTCTGGAGACTAAATATCCCCAGGGTGGCGAAAAG
ATGTTAATTAAAGCCCTCCTGGATAGGGAAGTGCCAGTGGGAGGTTTGCCGCTTGATGTAGGTGTGATTGTAAATAATGT
ATCTACAGCTGTGGCGGTAACTGATGCTATTAAGAAGGGAATGCCCCTCATTGAACGCCCGGTAACTATTACCGGTAGAG
GGGTTAAGAACCCCCTGAATTTAGTATTCAGGGTAGGGACTCCAATCGAGGATTTGATTGAACAGGCCGGAGGAATGGTT
TCTCCTGGAGGTAAGGTGATTGTAGGTGGACCCATGATGGGTATTTCACAACCTCATACCGGAATTCCTTCCAATAAAGG
GACTTCAGGTCTTTTGATTTTACCTCCAGAAGAGATTGAGGATTTTAATCCCAGACCATGTATTAAATGTGCCCGGTGTG
TCGATTCCTGTCCTATGATGTTGATGCCGATTCAACTTTCCAATTTTGCCAAACATGAAATGTATGACGAGCTTGAAAAG
TATAATGTTCTCAATTGTATTGAATGTGGTACCTGTTCTTATGTTTGCCCGGCCCGTCGCCCTCTGGTTGAGTATATAAG
GCTGGGAAAGGCAGAAATAATAGCCAGACGGAAAAAGGCTCAGTAA

Upstream 100 bases:

>100_bases
ATATAATATTTTTAGCATATGCCTGTTTTATTTTTTATTTAATATATATTCTTTTGTTAGTCGTAATACTGTATTATAAT
TACTAAAGGGGTGAAAAAAA

Downstream 100 bases:

>100_bases
GGAGGATAGTTATGAATAGGGAACAACTGGTAGTAACCTCATCACCTCATATCAGGGATGTTACTACTGTAAATCAGATA
ATGTGGTCTGTTGTTTTCTC

Product: RnfABCDGE type electron transport complex subunit C

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MGALTFRQGVHPEYNKELTRDKPLKKAARPGKVVIPLQQHIGAPCDPLVKKGDQVKLGQKIGDTDAFVSAPVHASVSGTV
KDITDVLTPSGKKSRAVVIEADEEDVLDESIKPRGELSDLTPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDHVI
LNGAECEPYLTVDHRIMVERSEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKKVVENEPGIEVKVLETKYPQGGEK
MLIKALLDREVPVGGLPLDVGVIVNNVSTAVAVTDAIKKGMPLIERPVTITGRGVKNPLNLVFRVGTPIEDLIEQAGGMV
SPGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIEDFNPRPCIKCARCVDSCPMMLMPIQLSNFAKHEMYDELEK
YNVLNCIECGTCSYVCPARRPLVEYIRLGKAEIIARRKKAQ

Sequences:

>Translated_441_residues
MGALTFRQGVHPEYNKELTRDKPLKKAARPGKVVIPLQQHIGAPCDPLVKKGDQVKLGQKIGDTDAFVSAPVHASVSGTV
KDITDVLTPSGKKSRAVVIEADEEDVLDESIKPRGELSDLTPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDHVI
LNGAECEPYLTVDHRIMVERSEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKKVVENEPGIEVKVLETKYPQGGEK
MLIKALLDREVPVGGLPLDVGVIVNNVSTAVAVTDAIKKGMPLIERPVTITGRGVKNPLNLVFRVGTPIEDLIEQAGGMV
SPGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIEDFNPRPCIKCARCVDSCPMMLMPIQLSNFAKHEMYDELEK
YNVLNCIECGTCSYVCPARRPLVEYIRLGKAEIIARRKKAQ
>Mature_440_residues
GALTFRQGVHPEYNKELTRDKPLKKAARPGKVVIPLQQHIGAPCDPLVKKGDQVKLGQKIGDTDAFVSAPVHASVSGTVK
DITDVLTPSGKKSRAVVIEADEEDVLDESIKPRGELSDLTPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDHVIL
NGAECEPYLTVDHRIMVERSEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKKVVENEPGIEVKVLETKYPQGGEKM
LIKALLDREVPVGGLPLDVGVIVNNVSTAVAVTDAIKKGMPLIERPVTITGRGVKNPLNLVFRVGTPIEDLIEQAGGMVS
PGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIEDFNPRPCIKCARCVDSCPMMLMPIQLSNFAKHEMYDELEKY
NVLNCIECGTCSYVCPARRPLVEYIRLGKAEIIARRKKAQ

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=442, Percent_Identity=40.9502262443439, Blast_Score=306, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47649; Mature: 47518

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALTFRQGVHPEYNKELTRDKPLKKAARPGKVVIPLQQHIGAPCDPLVKKGDQVKLGQK
CCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCEEEEEHHHHCCCCCCHHHCCCCCEEECCC
IGDTDAFVSAPVHASVSGTVKDITDVLTPSGKKSRAVVIEADEEDVLDESIKPRGELSDL
CCCCCHHEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCC
TPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDHVILNGAECEPYLTVDHRIMVER
CHHHHHHHHHHCCEEECCCCCCCCEEEEECCCCCCCCEEEEECCCCCCEEEECCEEEEEC
SEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKKVVENEPGIEVKVLETKYPQGGEK
CCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
MLIKALLDREVPVGGLPLDVGVIVNNVSTAVAVTDAIKKGMPLIERPVTITGRGVKNPLN
HHHHHHHHCCCCCCCCCEEHHHEECCCHHHHHHHHHHHCCCCCHHCCEEEECCCCCCCEE
LVFRVGTPIEDLIEQAGGMVSPGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIE
EEEECCCCHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHC
DFNPRPCIKCARCVDSCPMMLMPIQLSNFAKHEMYDELEKYNVLNCIECGTCSYVCPARR
CCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCH
PLVEYIRLGKAEIIARRKKAQ
HHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
GALTFRQGVHPEYNKELTRDKPLKKAARPGKVVIPLQQHIGAPCDPLVKKGDQVKLGQK
CCCCCCCCCCCCHHHHHHCCCCHHHHCCCCEEEEEHHHHCCCCCCHHHCCCCCEEECCC
IGDTDAFVSAPVHASVSGTVKDITDVLTPSGKKSRAVVIEADEEDVLDESIKPRGELSDL
CCCCCHHEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCC
TPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDHVILNGAECEPYLTVDHRIMVER
CHHHHHHHHHHCCEEECCCCCCCCEEEEECCCCCCCCEEEEECCCCCCEEEECCEEEEEC
SEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKKVVENEPGIEVKVLETKYPQGGEK
CCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
MLIKALLDREVPVGGLPLDVGVIVNNVSTAVAVTDAIKKGMPLIERPVTITGRGVKNPLN
HHHHHHHHCCCCCCCCCEEHHHEECCCHHHHHHHHHHHCCCCCHHCCEEEECCCCCCCEE
LVFRVGTPIEDLIEQAGGMVSPGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIE
EEEECCCCHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHC
DFNPRPCIKCARCVDSCPMMLMPIQLSNFAKHEMYDELEKYNVLNCIECGTCSYVCPARR
CCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCH
PLVEYIRLGKAEIIARRKKAQ
HHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]