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The map label for this gene is rnfD [H]

Identifier: 220932270

GI number: 220932270

Start: 1519398

End: 1520321

Strand: Reverse

Name: rnfD [H]

Synonym: Hore_14340

Alternate gene names: 220932270

Gene position: 1520321-1519398 (Counterclockwise)

Preceding gene: 220932271

Following gene: 220932269

Centisome position: 58.97

GC content: 43.72

Gene sequence:

>924_bases
ATGAATAGGGAACAACTGGTAGTAACCTCATCACCTCATATCAGGGATGTTACTACTGTAAATCAGATAATGTGGTCTGT
TGTTTTCTCACTGGTTCCGGCAATTGTAGCCGCAGTGTGGTTCTTTAAAATAAATGCTCTGCTAGTTATTTCAGTAACAG
TTGTTTTTGCTTTATTAACCGAGGTTATATTTCAAATTGCCCGGGGGAAGGAAGTAACTATTAATGATGGGAGTGCTGTG
ATTACAGGTATTTTACTTGCTTTAACCCTCCCGCCTACTATTCCGTTATGGATTGCAGCCCTCGGGAGTGTTGTGGCTGT
TGGCCTCGGGAAACAGGTTTTTGGTGGTCTGGGGTATAACCCCTTTAACCCGGCTCTCGTTGGTAGGGCCTTTTTAATAG
CTGCTTATCCGGTTCCCATGACCACCTGGATACTGGATGGTCAAACCACAGCTACCCCCTTAAATTTAATGAAGTCTGAT
GGAATTTTGACAGATTACTGGGATTTATTTATAGGTCATATTGGAGGCTGTTTAGGAGAAACTTCAGCCCTGGCTCTGTT
ACTGGGAGCGGTTTATTTAATCTATAAGGGTTATATAGACTGGAGGATTCCTGCCGGGATGTTGGGGTCTGTCTTTGTGC
TAACAATGTTATCTGGTCAGGATCCTGTTTTCCATCTCTTTGCCGGAGGCCTTGTACTCGGTGCTTTTTATATGGCAACC
GATATGGTAACAACACCGGTTACTAAAATGGGTCGCTGGATTTTTGGAGTTGGTGCTGGTCTTATTGTTGTTGTTATCAG
GTTATGGGGTGGTTATCCTGAAGGTGTCCTCTTTTCAATTCTTTTAATGAATATGACGGTACCGATTTTAAACCGTTATA
CCCGTCCCCGTAGCCTGGGGGAGGTGAAGGCAGGTGCAAAATAA

Upstream 100 bases:

>100_bases
CTTATGTTTGCCCGGCCCGTCGCCCTCTGGTTGAGTATATAAGGCTGGGAAAGGCAGAAATAATAGCCAGACGGAAAAAG
GCTCAGTAAGGAGGATAGTT

Downstream 100 bases:

>100_bases
TAATCTCATGAGGTTAGTTCTTACCTTAACAATTATCGGCCTTTTTTCTGCTTTTGCCCTTGCTTATGTATATGAATGGA
CTACTCCAATGATAAATAAA

Product: RnfABCDGE type electron transport complex subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNREQLVVTSSPHIRDVTTVNQIMWSVVFSLVPAIVAAVWFFKINALLVISVTVVFALLTEVIFQIARGKEVTINDGSAV
ITGILLALTLPPTIPLWIAALGSVVAVGLGKQVFGGLGYNPFNPALVGRAFLIAAYPVPMTTWILDGQTTATPLNLMKSD
GILTDYWDLFIGHIGGCLGETSALALLLGAVYLIYKGYIDWRIPAGMLGSVFVLTMLSGQDPVFHLFAGGLVLGAFYMAT
DMVTTPVTKMGRWIFGVGAGLIVVVIRLWGGYPEGVLFSILLMNMTVPILNRYTRPRSLGEVKAGAK

Sequences:

>Translated_307_residues
MNREQLVVTSSPHIRDVTTVNQIMWSVVFSLVPAIVAAVWFFKINALLVISVTVVFALLTEVIFQIARGKEVTINDGSAV
ITGILLALTLPPTIPLWIAALGSVVAVGLGKQVFGGLGYNPFNPALVGRAFLIAAYPVPMTTWILDGQTTATPLNLMKSD
GILTDYWDLFIGHIGGCLGETSALALLLGAVYLIYKGYIDWRIPAGMLGSVFVLTMLSGQDPVFHLFAGGLVLGAFYMAT
DMVTTPVTKMGRWIFGVGAGLIVVVIRLWGGYPEGVLFSILLMNMTVPILNRYTRPRSLGEVKAGAK
>Mature_307_residues
MNREQLVVTSSPHIRDVTTVNQIMWSVVFSLVPAIVAAVWFFKINALLVISVTVVFALLTEVIFQIARGKEVTINDGSAV
ITGILLALTLPPTIPLWIAALGSVVAVGLGKQVFGGLGYNPFNPALVGRAFLIAAYPVPMTTWILDGQTTATPLNLMKSD
GILTDYWDLFIGHIGGCLGETSALALLLGAVYLIYKGYIDWRIPAGMLGSVFVLTMLSGQDPVFHLFAGGLVLGAFYMAT
DMVTTPVTKMGRWIFGVGAGLIVVVIRLWGGYPEGVLFSILLMNMTVPILNRYTRPRSLGEVKAGAK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=36.4672364672365, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 33002; Mature: 33002

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREQLVVTSSPHIRDVTTVNQIMWSVVFSLVPAIVAAVWFFKINALLVISVTVVFALLT
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVIFQIARGKEVTINDGSAVITGILLALTLPPTIPLWIAALGSVVAVGLGKQVFGGLGYN
HHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCC
PFNPALVGRAFLIAAYPVPMTTWILDGQTTATPLNLMKSDGILTDYWDLFIGHIGGCLGE
CCCHHHHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCH
TSALALLLGAVYLIYKGYIDWRIPAGMLGSVFVLTMLSGQDPVFHLFAGGLVLGAFYMAT
HHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
DMVTTPVTKMGRWIFGVGAGLIVVVIRLWGGYPEGVLFSILLMNMTVPILNRYTRPRSLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
EVKAGAK
CCCCCCC
>Mature Secondary Structure
MNREQLVVTSSPHIRDVTTVNQIMWSVVFSLVPAIVAAVWFFKINALLVISVTVVFALLT
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVIFQIARGKEVTINDGSAVITGILLALTLPPTIPLWIAALGSVVAVGLGKQVFGGLGYN
HHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCC
PFNPALVGRAFLIAAYPVPMTTWILDGQTTATPLNLMKSDGILTDYWDLFIGHIGGCLGE
CCCHHHHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCH
TSALALLLGAVYLIYKGYIDWRIPAGMLGSVFVLTMLSGQDPVFHLFAGGLVLGAFYMAT
HHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
DMVTTPVTKMGRWIFGVGAGLIVVVIRLWGGYPEGVLFSILLMNMTVPILNRYTRPRSLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
EVKAGAK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA