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The map label for this gene is lytR [H]

Identifier: 220932176

GI number: 220932176

Start: 1437981

End: 1439198

Strand: Reverse

Name: lytR [H]

Synonym: Hore_13390

Alternate gene names: 220932176

Gene position: 1439198-1437981 (Counterclockwise)

Preceding gene: 220932177

Following gene: 220932175

Centisome position: 55.82

GC content: 34.56

Gene sequence:

>1218_bases
ATGAGAAAGCCCAGCAAGTCTATTATAGCAACACTCTTTATAATATTATTTATAACTGGTTTTATTCTGGCTATTATCTT
TAATACCCAGTTTAGTGTCTTACGGAGAAACCCCTTTAATACTTCTAAATTGAATATTCTTGTAGTTGGTTATGATTCCT
CAATAAATGGTCCCCCCCGGGCTGATACTATAATTCTGGCCAGTGTTGATTTAGATACAAAAGAAGTTGGGATTCTGTCA
ATTCCAAGGGATACAAGGGTTGAAATTCCTGGACATGGTGTTAACCGGGTTAATGCTTCCCATGCCTTCGGTGGGGTGAA
ATTAACTCATGAAACTCTGGAATCATTTTTGAATGTCAGGATAGATTATTATGTGGAAACAGATTTTCAGGGTTTTGCCC
GTATTGTTGATGCCATTGGTGGAGTTAAAGTTTATATAGAAGAACCCCTCCATTATGTTGATAAGGCAGGTGGGTTATAT
ATAGATTTACCGGCTGGAGAGCATCTACTAAATGGTGAAAAAGCCCTGGAATATGTCAGATTCAGGGAGCCCGTATATGG
AGATATTGGGAGAATAAAGAGGCAGCAGAAATTTATAAAGTCAATGATTAAAAAAGTACTCAGTCCAGATACTATAGTTA
AGCTCCCTGCTATTTATAAAATTTTCAGGGAGTCAGTTAAAACCAATATTCCTCTCAAGGATATAAGTCCTTTTATTCAT
CTTTTTAAAGATGTTAACCTGGATAATATCCAGGCAGAGATTGTCCCTGGTGAACCCAGATATATAGATGGTGTCAGTTA
CTGGATTTCTGATAGAAAGAAACTTGGGATCCTGGTTGAAAACCTTATAATGAGTAAAGAATATATTAATAATGGGCAGT
ATCATTTAGTTATTAATAATGGCAATGGAGTAACTGGACTAGCCGGTGAACTGTCCGATGAACTTGAGAAATATGGTTTC
TATATTGAGAAGATAGGAAATGCTGATCACTTTGATTATAATAATACTCTTATTAAGTACTATGACATAAGGGATAAAAA
TTGTGCTTTTAAGATACAAAAATTAATTGGTGGCAAAGTGAAACATGTTGAAGATACTGAAAAGGGTTTTCTGGAGATAA
TTATTGGCCATGATTATTTAAAAAGAATAGATTATAAAGAAGAAAAGAAAAAAATAGAAAAGAAAGAAGATAAGGGAGTT
GGTAAAAAGGATGAGTAA

Upstream 100 bases:

>100_bases
TGCCTGTAATCAGTCTCTTGAGTATAACATAAAAAAAGGTCGCATTATACATCCCAATACTTTACTGCTTAGAAACGAAT
GTTTAAGGAGGATACAATAG

Downstream 100 bases:

>100_bases
TAATACTGAAAAGACTACTAAAGAGTTAGCTATACTGGCTGCTGAAGCAGCTGAAGATAAAAAAGCAAATGATGTTCAGG
TATTAGATGTCAAGGAGTTA

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MRKPSKSIIATLFIILFITGFILAIIFNTQFSVLRRNPFNTSKLNILVVGYDSSINGPPRADTIILASVDLDTKEVGILS
IPRDTRVEIPGHGVNRVNASHAFGGVKLTHETLESFLNVRIDYYVETDFQGFARIVDAIGGVKVYIEEPLHYVDKAGGLY
IDLPAGEHLLNGEKALEYVRFREPVYGDIGRIKRQQKFIKSMIKKVLSPDTIVKLPAIYKIFRESVKTNIPLKDISPFIH
LFKDVNLDNIQAEIVPGEPRYIDGVSYWISDRKKLGILVENLIMSKEYINNGQYHLVINNGNGVTGLAGELSDELEKYGF
YIEKIGNADHFDYNNTLIKYYDIRDKNCAFKIQKLIGGKVKHVEDTEKGFLEIIIGHDYLKRIDYKEEKKKIEKKEDKGV
GKKDE

Sequences:

>Translated_405_residues
MRKPSKSIIATLFIILFITGFILAIIFNTQFSVLRRNPFNTSKLNILVVGYDSSINGPPRADTIILASVDLDTKEVGILS
IPRDTRVEIPGHGVNRVNASHAFGGVKLTHETLESFLNVRIDYYVETDFQGFARIVDAIGGVKVYIEEPLHYVDKAGGLY
IDLPAGEHLLNGEKALEYVRFREPVYGDIGRIKRQQKFIKSMIKKVLSPDTIVKLPAIYKIFRESVKTNIPLKDISPFIH
LFKDVNLDNIQAEIVPGEPRYIDGVSYWISDRKKLGILVENLIMSKEYINNGQYHLVINNGNGVTGLAGELSDELEKYGF
YIEKIGNADHFDYNNTLIKYYDIRDKNCAFKIQKLIGGKVKHVEDTEKGFLEIIIGHDYLKRIDYKEEKKKIEKKEDKGV
GKKDE
>Mature_405_residues
MRKPSKSIIATLFIILFITGFILAIIFNTQFSVLRRNPFNTSKLNILVVGYDSSINGPPRADTIILASVDLDTKEVGILS
IPRDTRVEIPGHGVNRVNASHAFGGVKLTHETLESFLNVRIDYYVETDFQGFARIVDAIGGVKVYIEEPLHYVDKAGGLY
IDLPAGEHLLNGEKALEYVRFREPVYGDIGRIKRQQKFIKSMIKKVLSPDTIVKLPAIYKIFRESVKTNIPLKDISPFIH
LFKDVNLDNIQAEIVPGEPRYIDGVSYWISDRKKLGILVENLIMSKEYINNGQYHLVINNGNGVTGLAGELSDELEKYGF
YIEKIGNADHFDYNNTLIKYYDIRDKNCAFKIQKLIGGKVKHVEDTEKGFLEIIIGHDYLKRIDYKEEKKKIEKKEDKGV
GKKDE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 46029; Mature: 46029

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPSKSIIATLFIILFITGFILAIIFNTQFSVLRRNPFNTSKLNILVVGYDSSINGPPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCC
ADTIILASVDLDTKEVGILSIPRDTRVEIPGHGVNRVNASHAFGGVKLTHETLESFLNVR
CCEEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHCEE
IDYYVETDFQGFARIVDAIGGVKVYIEEPLHYVDKAGGLYIDLPAGEHLLNGEKALEYVR
EEEEEECCHHHHHHHHHHHCCEEEEEECHHHHHHCCCCEEEECCCCCHHHCHHHHHHHHH
FREPVYGDIGRIKRQQKFIKSMIKKVLSPDTIVKLPAIYKIFRESVKTNIPLKDISPFIH
HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
LFKDVNLDNIQAEIVPGEPRYIDGVSYWISDRKKLGILVENLIMSKEYINNGQYHLVINN
HHHCCCCCCEEEEEECCCCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
GNGVTGLAGELSDELEKYGFYIEKIGNADHFDYNNTLIKYYDIRDKNCAFKIQKLIGGKV
CCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCC
KHVEDTEKGFLEIIIGHDYLKRIDYKEEKKKIEKKEDKGVGKKDE
CCCCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRKPSKSIIATLFIILFITGFILAIIFNTQFSVLRRNPFNTSKLNILVVGYDSSINGPPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCC
ADTIILASVDLDTKEVGILSIPRDTRVEIPGHGVNRVNASHAFGGVKLTHETLESFLNVR
CCEEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHCEE
IDYYVETDFQGFARIVDAIGGVKVYIEEPLHYVDKAGGLYIDLPAGEHLLNGEKALEYVR
EEEEEECCHHHHHHHHHHHCCEEEEEECHHHHHHCCCCEEEECCCCCHHHCHHHHHHHHH
FREPVYGDIGRIKRQQKFIKSMIKKVLSPDTIVKLPAIYKIFRESVKTNIPLKDISPFIH
HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
LFKDVNLDNIQAEIVPGEPRYIDGVSYWISDRKKLGILVENLIMSKEYINNGQYHLVINN
HHHCCCCCCEEEEEECCCCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
GNGVTGLAGELSDELEKYGFYIEKIGNADHFDYNNTLIKYYDIRDKNCAFKIQKLIGGKV
CCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCC
KHVEDTEKGFLEIIIGHDYLKRIDYKEEKKKIEKKEDKGVGKKDE
CCCCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA