| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is 220932145
Identifier: 220932145
GI number: 220932145
Start: 1403430
End: 1405268
Strand: Reverse
Name: 220932145
Synonym: Hore_13080
Alternate gene names: NA
Gene position: 1405268-1403430 (Counterclockwise)
Preceding gene: 220932146
Following gene: 220932144
Centisome position: 54.51
GC content: 43.12
Gene sequence:
>1839_bases ATGCCACTCGGGGAATATGTTGCCAACCAGCTGGAAAAAGCCGGTTTTAAAGTGGAAAGACTGGTCTGGGAACGGGCCAG GTGTGTGGAAACGGTATATTTCGGTAGACCTGAAGACTATGGATGGAATCTTTACACAGAAGCATGGTCAGCAGGTGCTA CCAGAGCGTGGTGGGAACATATCGTCGGTCAGATGTACGCCTCCTGGGGTGGGTTTACAGCAGGTGCCCTTGCTGATGGC TGGGTATTCAAAAATGAAGAACTTGATAGTATAGCCCAGAAGGCCTATTCCGGTAACTTTTTAACTACTGAAGAATACTG GGATTTAGTTCTGACAGCACTTGACATAGCCCTCGATGAATCCCAGCGTATCTATGTCTGCTATTCAACTGCAAACTATC TGGCCCATAAAGAGCGCTTTGAAGGTAGGTTTGCTTACGGTTTAGGTGATGGCCCCAGTAAATATTCCATTGTTACTGCC AGGACTAAAGATAGGATTTTGAGAGTTACGGAACTTTCTTCCCAGGGGAGCCTCTTTATGAGTGCCTGGGACCCGGTGGG AGCCGGTGGATTTGATGATACCTATATTGGTTATATAGCAGAGCCATTATATGACAACGCTGTCTTTGAAAGTCCTTCTA CTGCTGAATTTACCTGGCTCAGGGCTATTCCCGATATGGATGAAAGTTATACCAAGGTACACCGGAATGAAGATGGAGAA GTAGTGGGAGATGTGCCTGTTCCTGAAGATGCAATTTATTATGACCCGGTTGAAGAGAAGTGGGTTGAAATCGGGCCCGG TAAAACTGCCTTTACCAAAGGTGTTTACAGATATAGGTTAAGTAACTACCACCACGGTATTCCCATGAGCCTGGTAGACT TTATGTATGCAGATGCATTTATAGAAGAATGGTCTACCAAAGACTTTGAAGGAGACCCCTATTATGATAAGAGTTATGCT GCAAATATGAATGCATTTGATATTGATGTTGCCACTATATATGACCTGGAAAACAATGTAGCCATTAATTATTTTAATTA CAACTTCCCGGCCAGTAAGAAAAGGGCTCTGGCCCAGGGAGCTCCTTACTTTGATGTAACTGCTTCAGGCCATTACTGTG GCGTTAGCTGGGAGATTTTAGAAGCCCTGGCCCGGATGGTCGCCGAAGGTTCAACTTCTGGTACAAAGTATTCATTCTCC AAGGGTATTAAAGGTACTGAAGAAGTTGACCTCCTTACTCCTTCCCATGTTGAGGATCTCAAGGCTGAATTAAGAGAAAT GATAGAAGAAAAACACGTGCCTGTATCTATAAAGGACTATATAACTCCAGAAGAATGTATAAAAAGATATAAGGCTGCCC TTGATTTTATTGAAAAATATGGCCATGGTTATATCAGTAATGGGCCCTTCTATTTAAGTAAATATGATCCGGAAACCAGT TTTGCTGAATTAACAGCTTTCAGGGATGAAACTTATCCCTTCGAACCGGGCTACTGGATGGAACACTTTAAGTCAACCCG TCTGGTAATAGACCAGTTAGAATTACCTGTTATGTCTGAAAAAGGTAAGGATATCCTTGTTGATATCCATGTGACCAGTA TAGAATACCCTGAAAAAGAAGGTAAACTTGCTGAAGCAGGTAATGTTACTCTGACCCTGCTGGCGGGGGATAAGGAATAT AAATTTAAAGCAGATGAAGCTATCCCCGGCGTATTTATTGCCAAAATTCCAGGTAATGTAACTGCTGAGCTGGAACCAGG TTCCTATAAAGTGATGGCTGTTGCTGAGGCTAAGGATGCCCTTCCTTCTACGGTTTCTAAAACCCTTGTAATTTACTAA
Upstream 100 bases:
>100_bases AAACGAGGGAAGGCTTAAAAAAGAGGGTAAATGATGGACATATGATGGCAAACCTATCACCCTTAAATTCCTTATCAGGG CTGATGACCCACAGGTAAGA
Downstream 100 bases:
>100_bases TTTACAATTGAGGTGAAACGGTAAAAAAGGGGTTTATGTTACAAATATAATTAATTTCATTGTAGAAATTAAATATGCCC CCTGGTATTAAACAGGGGGC
Product: lipoprotein
Products: NA
Alternate protein names: Lipoprotein; ABC-Type Dipeptide/Oligopeptide Transport System; Peptide ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MPLGEYVANQLEKAGFKVERLVWERARCVETVYFGRPEDYGWNLYTEAWSAGATRAWWEHIVGQMYASWGGFTAGALADG WVFKNEELDSIAQKAYSGNFLTTEEYWDLVLTALDIALDESQRIYVCYSTANYLAHKERFEGRFAYGLGDGPSKYSIVTA RTKDRILRVTELSSQGSLFMSAWDPVGAGGFDDTYIGYIAEPLYDNAVFESPSTAEFTWLRAIPDMDESYTKVHRNEDGE VVGDVPVPEDAIYYDPVEEKWVEIGPGKTAFTKGVYRYRLSNYHHGIPMSLVDFMYADAFIEEWSTKDFEGDPYYDKSYA ANMNAFDIDVATIYDLENNVAINYFNYNFPASKKRALAQGAPYFDVTASGHYCGVSWEILEALARMVAEGSTSGTKYSFS KGIKGTEEVDLLTPSHVEDLKAELREMIEEKHVPVSIKDYITPEECIKRYKAALDFIEKYGHGYISNGPFYLSKYDPETS FAELTAFRDETYPFEPGYWMEHFKSTRLVIDQLELPVMSEKGKDILVDIHVTSIEYPEKEGKLAEAGNVTLTLLAGDKEY KFKADEAIPGVFIAKIPGNVTAELEPGSYKVMAVAEAKDALPSTVSKTLVIY
Sequences:
>Translated_612_residues MPLGEYVANQLEKAGFKVERLVWERARCVETVYFGRPEDYGWNLYTEAWSAGATRAWWEHIVGQMYASWGGFTAGALADG WVFKNEELDSIAQKAYSGNFLTTEEYWDLVLTALDIALDESQRIYVCYSTANYLAHKERFEGRFAYGLGDGPSKYSIVTA RTKDRILRVTELSSQGSLFMSAWDPVGAGGFDDTYIGYIAEPLYDNAVFESPSTAEFTWLRAIPDMDESYTKVHRNEDGE VVGDVPVPEDAIYYDPVEEKWVEIGPGKTAFTKGVYRYRLSNYHHGIPMSLVDFMYADAFIEEWSTKDFEGDPYYDKSYA ANMNAFDIDVATIYDLENNVAINYFNYNFPASKKRALAQGAPYFDVTASGHYCGVSWEILEALARMVAEGSTSGTKYSFS KGIKGTEEVDLLTPSHVEDLKAELREMIEEKHVPVSIKDYITPEECIKRYKAALDFIEKYGHGYISNGPFYLSKYDPETS FAELTAFRDETYPFEPGYWMEHFKSTRLVIDQLELPVMSEKGKDILVDIHVTSIEYPEKEGKLAEAGNVTLTLLAGDKEY KFKADEAIPGVFIAKIPGNVTAELEPGSYKVMAVAEAKDALPSTVSKTLVIY >Mature_611_residues PLGEYVANQLEKAGFKVERLVWERARCVETVYFGRPEDYGWNLYTEAWSAGATRAWWEHIVGQMYASWGGFTAGALADGW VFKNEELDSIAQKAYSGNFLTTEEYWDLVLTALDIALDESQRIYVCYSTANYLAHKERFEGRFAYGLGDGPSKYSIVTAR TKDRILRVTELSSQGSLFMSAWDPVGAGGFDDTYIGYIAEPLYDNAVFESPSTAEFTWLRAIPDMDESYTKVHRNEDGEV VGDVPVPEDAIYYDPVEEKWVEIGPGKTAFTKGVYRYRLSNYHHGIPMSLVDFMYADAFIEEWSTKDFEGDPYYDKSYAA NMNAFDIDVATIYDLENNVAINYFNYNFPASKKRALAQGAPYFDVTASGHYCGVSWEILEALARMVAEGSTSGTKYSFSK GIKGTEEVDLLTPSHVEDLKAELREMIEEKHVPVSIKDYITPEECIKRYKAALDFIEKYGHGYISNGPFYLSKYDPETSF AELTAFRDETYPFEPGYWMEHFKSTRLVIDQLELPVMSEKGKDILVDIHVTSIEYPEKEGKLAEAGNVTLTLLAGDKEYK FKADEAIPGVFIAKIPGNVTAELEPGSYKVMAVAEAKDALPSTVSKTLVIY
Specific function: Unknown
COG id: COG3889
COG function: function code R; Predicted solute binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69045; Mature: 68914
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLGEYVANQLEKAGFKVERLVWERARCVETVYFGRPEDYGWNLYTEAWSAGATRAWWEH CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHH IVGQMYASWGGFTAGALADGWVFKNEELDSIAQKAYSGNFLTTEEYWDLVLTALDIALDE HHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCC SQRIYVCYSTANYLAHKERFEGRFAYGLGDGPSKYSIVTARTKDRILRVTELSSQGSLFM CCEEEEEEECHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEE SAWDPVGAGGFDDTYIGYIAEPLYDNAVFESPSTAEFTWLRAIPDMDESYTKVHRNEDGE EECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCC VVGDVPVPEDAIYYDPVEEKWVEIGPGKTAFTKGVYRYRLSNYHHGIPMSLVDFMYADAF EEECCCCCCCCEEECCHHHHHEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH IEEWSTKDFEGDPYYDKSYAANMNAFDIDVATIYDLENNVAINYFNYNFPASKKRALAQG HHHCCCCCCCCCCCCCCHHHCCCCEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHCC APYFDVTASGHYCGVSWEILEALARMVAEGSTSGTKYSFSKGIKGTEEVDLLTPSHVEDL CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCCEEEECCCHHHHH KAELREMIEEKHVPVSIKDYITPEECIKRYKAALDFIEKYGHGYISNGPFYLSKYDPETS HHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCC FAELTAFRDETYPFEPGYWMEHFKSTRLVIDQLELPVMSEKGKDILVDIHVTSIEYPEKE HHHHHHHCCCCCCCCCCHHHHHHCCHHEEEEHHCCCCCCCCCCEEEEEEEEEEECCCCCC GKLAEAGNVTLTLLAGDKEYKFKADEAIPGVFIAKIPGNVTAELEPGSYKVMAVAEAKDA CCEEECCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCEEEEECCCCEEEEEEECHHHC LPSTVSKTLVIY CHHHHCCEEEEC >Mature Secondary Structure PLGEYVANQLEKAGFKVERLVWERARCVETVYFGRPEDYGWNLYTEAWSAGATRAWWEH CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHH IVGQMYASWGGFTAGALADGWVFKNEELDSIAQKAYSGNFLTTEEYWDLVLTALDIALDE HHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCC SQRIYVCYSTANYLAHKERFEGRFAYGLGDGPSKYSIVTARTKDRILRVTELSSQGSLFM CCEEEEEEECHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEE SAWDPVGAGGFDDTYIGYIAEPLYDNAVFESPSTAEFTWLRAIPDMDESYTKVHRNEDGE EECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCC VVGDVPVPEDAIYYDPVEEKWVEIGPGKTAFTKGVYRYRLSNYHHGIPMSLVDFMYADAF EEECCCCCCCCEEECCHHHHHEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH IEEWSTKDFEGDPYYDKSYAANMNAFDIDVATIYDLENNVAINYFNYNFPASKKRALAQG HHHCCCCCCCCCCCCCCHHHCCCCEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHCC APYFDVTASGHYCGVSWEILEALARMVAEGSTSGTKYSFSKGIKGTEEVDLLTPSHVEDL CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCCEEEECCCHHHHH KAELREMIEEKHVPVSIKDYITPEECIKRYKAALDFIEKYGHGYISNGPFYLSKYDPETS HHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCC FAELTAFRDETYPFEPGYWMEHFKSTRLVIDQLELPVMSEKGKDILVDIHVTSIEYPEKE HHHHHHHCCCCCCCCCCHHHHHHCCHHEEEEHHCCCCCCCCCCEEEEEEEEEEECCCCCC GKLAEAGNVTLTLLAGDKEYKFKADEAIPGVFIAKIPGNVTAELEPGSYKVMAVAEAKDA CCEEECCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCEEEEECCCCEEEEEEECHHHC LPSTVSKTLVIY CHHHHCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA