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The map label for this gene is ylbK [H]

Identifier: 220931860

GI number: 220931860

Start: 1107538

End: 1108320

Strand: Direct

Name: ylbK [H]

Synonym: Hore_10170

Alternate gene names: 220931860

Gene position: 1107538-1108320 (Clockwise)

Preceding gene: 220931859

Following gene: 220931861

Centisome position: 42.96

GC content: 40.49

Gene sequence:

>783_bases
TTGGTAAATGGCCTTAAAATAGGTATTGCCCTGGGAGCTGGAGCAGCCCGTGGTCTGGCCCATATCGGGGTTTTAGAGGT
TCTCGAAGAAGAAGATATTGAGGTAGATATGGTGGCGGGCTCAAGTATAGGGAGTCTAATCGGGGGTATTTATGCCTGTG
GGGTTCCCCTTAGATATATAAAGGGTTTGGCCAGTGAGATAAACTGGGATCATATTACCGATATAACCTTTCCCCGGAAG
GGATTGATTAAAGGGGATAAGTTGTTATCGTTTTTGGAGATAATTACCAGTAACAAAGATATATCTGAACTAGAAATCCC
CTTTGCGGCAGTAGCCTGTGATATAGAGAAGGGGGAATTAATTGTAATAAAGGATGGTCCTTTGGCCAAGGCAATTAGAG
CCAGCACCTCGATTCCAGGGATATATGTTCCCTATTTTTATAAAAATAGGCTCCTGGTCGATGGGGCTGTTCTTGATAGG
GTTCCGGTTTCAATTGTTAAGGAGATGGGGGCTGATGTTGTAATAGCAGTGGATGTTGGTGTAAAAAATATAAATAAGAA
AGTCAATAATATGTTTGATGTGTTATTTAATACCTTTGATATCATGCAACATGAAATGGATAAATATCGTAAGATAGAAT
CTGATATTCTAATAAGGCCAGACTTAGGTTATTATTCTTCATTTGACCTTGACAGGGCTGAACACTGTATCCAGCTAGGT
TACAGGGCTGCCAGAGATTCTTTGCCTGAAATTATGAAAATTATTGAGGAGAGGGTTGAATGA

Upstream 100 bases:

>100_bases
GGTAAAAAATTGCGGGTTTTTCTTAAGTATAAAATTAGATATAACTTTTTTTGGTAATATTATGTCTGTTTATTAATATA
TTAAATAGGGAGGAATCCTG

Downstream 100 bases:

>100_bases
CTGAGAATAAGGGTTTAATTAAAAGTAATGCTGTTAAATTATTTATAGCAATAATTATACTTTTTATTATTGTTAATTTA
GTTCCGACAAAATATTATGT

Product: Patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MVNGLKIGIALGAGAARGLAHIGVLEVLEEEDIEVDMVAGSSIGSLIGGIYACGVPLRYIKGLASEINWDHITDITFPRK
GLIKGDKLLSFLEIITSNKDISELEIPFAAVACDIEKGELIVIKDGPLAKAIRASTSIPGIYVPYFYKNRLLVDGAVLDR
VPVSIVKEMGADVVIAVDVGVKNINKKVNNMFDVLFNTFDIMQHEMDKYRKIESDILIRPDLGYYSSFDLDRAEHCIQLG
YRAARDSLPEIMKIIEERVE

Sequences:

>Translated_260_residues
MVNGLKIGIALGAGAARGLAHIGVLEVLEEEDIEVDMVAGSSIGSLIGGIYACGVPLRYIKGLASEINWDHITDITFPRK
GLIKGDKLLSFLEIITSNKDISELEIPFAAVACDIEKGELIVIKDGPLAKAIRASTSIPGIYVPYFYKNRLLVDGAVLDR
VPVSIVKEMGADVVIAVDVGVKNINKKVNNMFDVLFNTFDIMQHEMDKYRKIESDILIRPDLGYYSSFDLDRAEHCIQLG
YRAARDSLPEIMKIIEERVE
>Mature_260_residues
MVNGLKIGIALGAGAARGLAHIGVLEVLEEEDIEVDMVAGSSIGSLIGGIYACGVPLRYIKGLASEINWDHITDITFPRK
GLIKGDKLLSFLEIITSNKDISELEIPFAAVACDIEKGELIVIKDGPLAKAIRASTSIPGIYVPYFYKNRLLVDGAVLDR
VPVSIVKEMGADVVIAVDVGVKNINKKVNNMFDVLFNTFDIMQHEMDKYRKIESDILIRPDLGYYSSFDLDRAEHCIQLG
YRAARDSLPEIMKIIEERVE

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=194, Percent_Identity=35.5670103092784, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI260656041, Length=194, Percent_Identity=35.5670103092784, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI260656039, Length=194, Percent_Identity=35.5670103092784, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI260656037, Length=194, Percent_Identity=35.5670103092784, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI116256487, Length=194, Percent_Identity=35.5670103092784, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI148727335, Length=283, Percent_Identity=27.9151943462898, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI148727290, Length=283, Percent_Identity=27.9151943462898, Blast_Score=106, Evalue=2e-23,
Organism=Escherichia coli, GI226510936, Length=298, Percent_Identity=30.5369127516779, Blast_Score=144, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI193204778, Length=201, Percent_Identity=32.3383084577114, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71997299, Length=266, Percent_Identity=27.4436090225564, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71997289, Length=266, Percent_Identity=27.4436090225564, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323581, Length=277, Percent_Identity=25.9927797833935, Blast_Score=106, Evalue=4e-24,
Organism=Drosophila melanogaster, GI281376913, Length=192, Percent_Identity=31.7708333333333, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI28571388, Length=193, Percent_Identity=30.5699481865285, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 28625; Mature: 28625

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNGLKIGIALGAGAARGLAHIGVLEVLEEEDIEVDMVAGSSIGSLIGGIYACGVPLRYI
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHH
KGLASEINWDHITDITFPRKGLIKGDKLLSFLEIITSNKDISELEIPFAAVACDIEKGEL
HHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHEEEECCCCCE
IVIKDGPLAKAIRASTSIPGIYVPYFYKNRLLVDGAVLDRVPVSIVKEMGADVVIAVDVG
EEEECCCHHHHHHHCCCCCEEEECEEECCEEEECCHHHHHHHHHHHHHCCCCEEEEEECC
VKNINKKVNNMFDVLFNTFDIMQHEMDKYRKIESDILIRPDLGYYSSFDLDRAEHCIQLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHH
YRAARDSLPEIMKIIEERVE
HHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVNGLKIGIALGAGAARGLAHIGVLEVLEEEDIEVDMVAGSSIGSLIGGIYACGVPLRYI
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHH
KGLASEINWDHITDITFPRKGLIKGDKLLSFLEIITSNKDISELEIPFAAVACDIEKGEL
HHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHEEEECCCCCE
IVIKDGPLAKAIRASTSIPGIYVPYFYKNRLLVDGAVLDRVPVSIVKEMGADVVIAVDVG
EEEECCCHHHHHHHCCCCCEEEECEEECCEEEECCHHHHHHHHHHHHHCCCCEEEEEECC
VKNINKKVNNMFDVLFNTFDIMQHEMDKYRKIESDILIRPDLGYYSSFDLDRAEHCIQLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHH
YRAARDSLPEIMKIIEERVE
HHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]