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The map label for this gene is rhaB [H]

Identifier: 220931803

GI number: 220931803

Start: 1037948

End: 1039378

Strand: Direct

Name: rhaB [H]

Synonym: Hore_09600

Alternate gene names: 220931803

Gene position: 1037948-1039378 (Clockwise)

Preceding gene: 220931802

Following gene: 220931804

Centisome position: 40.26

GC content: 31.1

Gene sequence:

>1431_bases
ATGAATGAATACTTAAATCTTTTAGCTATTGATTTAGGTGCTTCTAATGGTCGGGCCATTATAGGTAAATATGATGGTAA
CAAAATAAAACTAGAAGAAGTGCATAAATTTAAAAATGGTCCAGAAAGGGTAACAAATAACTTATACTGGGATATTTTAA
GACTTTTTCATGAAGTAAAAACCGGTATTACAAAAGCAAGTGAGTTTACAGATTATAATATAAGTAGTCTTGGTATAGAT
ACCTGGGGGGTTGATTATGGTTTATTAGATAGAGAGGGTAATTTACTGTCAAACCCTTATCATTATAGAGATAATAGGAC
TGATGGTTTATTAAAAGAAATATATAAAAAAGTTAGTAAAAAAAGGATATACCAATTGACTGGAATTCAATTCATGCAAT
TAAACACTCTGGTTCAGCTCTATGCAGATTTGAAATATCGACCATGGGTTTTAAATAATGCTAAAAGTCTTTTGTTTACT
CCAGATTTAATAAATTATTTTTTAACTGGAAAAAAATATAATGAATTTACTATATCATCAACTTCACAATTGCTTAATCC
GCTTACAGAGAAATGGGAACATGAACTCTTTGAAGAATTAGATATTCCCAGTAATATTGTGGAAACTTTAATTTACCCTG
GAACGAAAATAGGTAATATTATACCTGAGGTAAAAGAAGAGTGTGGGCTTAGGGGAGATTTGCCTGTAATTGCTGTTGGA
AGTCATGATACAGCATCAGCAGTGGCTGCAACACCTTTAGAGGATAATAAAAATAGTATTTATATAAGTAGTGGGACCTG
GTCACTGTTAGGGATGGAACTTGACCAGCCAATAATTAATGAAAAATCATTAAAAGAAAATTTTACTAATGAATGTGGTG
TTGGTAAAAAAATAACTTTCCTAAAGAATATGTGTGGTTTATGGATGATTCAAGAATGTAAACGAATTTGGGAAAGAGAA
GGCTTAGATATAAGTTATTCAGAAATTAGTAAGGCTGCCATGGAAGTTGATTCTTTTATATTTAATGTAAATCCTGATGA
TCCCAGATTTTTAAATCCCAAAAATATGCCCTTGGCTATAAAAGAATATTGTCAGGAAACTGAACAACAAATACCATGTA
ATTATGCAGAAATGGCCAGAGGTATTTATGAAAGTTTAGCGTTGAATTATAAAAGGGTTATAGATAAATTAGAAAAAATT
GTAGGTGTTAAAATTGATAAAATACATATGGTAGGTGGAGGTATAAAAGCAGAAATATTATGCCAATTCACAGCAAATGT
AACCGGAAAAACGGTTATAGCAGGTCCAGTTGAAGCTACTGCTATGGGAAATATACTGGCTCAGCTAATGGCCCGGGGAG
AAATTAAAAATTTAAAAGAAGGTCGAGAAATAATTAAAAATTCAGTTGAATTAAAACATTATAACCCTTAA

Upstream 100 bases:

>100_bases
GTATGTATTTAGGGCCAGGTATTAAAGTTCTGATTATTACTGAAGTATCTTAATGAAAAATTTTAAGGAAAAAGTTTTAT
ATTTTTAAGGAGGTGATCTG

Downstream 100 bases:

>100_bases
TTAAAATCAGATAGGTGGTGTGTAAATTGCTTTTAGAAAAAGAACGAAAACAGATAGTTGAATATGGCAAGAAATTAATA
GATTCAGGTTTGACCAGGGG

Product: Rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MNEYLNLLAIDLGASNGRAIIGKYDGNKIKLEEVHKFKNGPERVTNNLYWDILRLFHEVKTGITKASEFTDYNISSLGID
TWGVDYGLLDREGNLLSNPYHYRDNRTDGLLKEIYKKVSKKRIYQLTGIQFMQLNTLVQLYADLKYRPWVLNNAKSLLFT
PDLINYFLTGKKYNEFTISSTSQLLNPLTEKWEHELFEELDIPSNIVETLIYPGTKIGNIIPEVKEECGLRGDLPVIAVG
SHDTASAVAATPLEDNKNSIYISSGTWSLLGMELDQPIINEKSLKENFTNECGVGKKITFLKNMCGLWMIQECKRIWERE
GLDISYSEISKAAMEVDSFIFNVNPDDPRFLNPKNMPLAIKEYCQETEQQIPCNYAEMARGIYESLALNYKRVIDKLEKI
VGVKIDKIHMVGGGIKAEILCQFTANVTGKTVIAGPVEATAMGNILAQLMARGEIKNLKEGREIIKNSVELKHYNP

Sequences:

>Translated_476_residues
MNEYLNLLAIDLGASNGRAIIGKYDGNKIKLEEVHKFKNGPERVTNNLYWDILRLFHEVKTGITKASEFTDYNISSLGID
TWGVDYGLLDREGNLLSNPYHYRDNRTDGLLKEIYKKVSKKRIYQLTGIQFMQLNTLVQLYADLKYRPWVLNNAKSLLFT
PDLINYFLTGKKYNEFTISSTSQLLNPLTEKWEHELFEELDIPSNIVETLIYPGTKIGNIIPEVKEECGLRGDLPVIAVG
SHDTASAVAATPLEDNKNSIYISSGTWSLLGMELDQPIINEKSLKENFTNECGVGKKITFLKNMCGLWMIQECKRIWERE
GLDISYSEISKAAMEVDSFIFNVNPDDPRFLNPKNMPLAIKEYCQETEQQIPCNYAEMARGIYESLALNYKRVIDKLEKI
VGVKIDKIHMVGGGIKAEILCQFTANVTGKTVIAGPVEATAMGNILAQLMARGEIKNLKEGREIIKNSVELKHYNP
>Mature_476_residues
MNEYLNLLAIDLGASNGRAIIGKYDGNKIKLEEVHKFKNGPERVTNNLYWDILRLFHEVKTGITKASEFTDYNISSLGID
TWGVDYGLLDREGNLLSNPYHYRDNRTDGLLKEIYKKVSKKRIYQLTGIQFMQLNTLVQLYADLKYRPWVLNNAKSLLFT
PDLINYFLTGKKYNEFTISSTSQLLNPLTEKWEHELFEELDIPSNIVETLIYPGTKIGNIIPEVKEECGLRGDLPVIAVG
SHDTASAVAATPLEDNKNSIYISSGTWSLLGMELDQPIINEKSLKENFTNECGVGKKITFLKNMCGLWMIQECKRIWERE
GLDISYSEISKAAMEVDSFIFNVNPDDPRFLNPKNMPLAIKEYCQETEQQIPCNYAEMARGIYESLALNYKRVIDKLEKI
VGVKIDKIHMVGGGIKAEILCQFTANVTGKTVIAGPVEATAMGNILAQLMARGEIKNLKEGREIIKNSVELKHYNP

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=475, Percent_Identity=38.3157894736842, Blast_Score=337, Evalue=1e-93,
Organism=Escherichia coli, GI1789168, Length=483, Percent_Identity=25.2587991718427, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787789, Length=478, Percent_Identity=22.3849372384937, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 53944; Mature: 53944

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEYLNLLAIDLGASNGRAIIGKYDGNKIKLEEVHKFKNGPERVTNNLYWDILRLFHEVK
CCCCEEEEEEEECCCCCCEEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TGITKASEFTDYNISSLGIDTWGVDYGLLDREGNLLSNPYHYRDNRTDGLLKEIYKKVSK
HHHCCHHHCCCCCCHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KRIYQLTGIQFMQLNTLVQLYADLKYRPWVLNNAKSLLFTPDLINYFLTGKKYNEFTISS
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEECHHHHHHHHCCCCCCEEEECC
TSQLLNPLTEKWEHELFEELDIPSNIVETLIYPGTKIGNIIPEVKEECGLRGDLPVIAVG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEC
SHDTASAVAATPLEDNKNSIYISSGTWSLLGMELDQPIINEKSLKENFTNECGVGKKITF
CCCCCHHEEECCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHCCHHCCCCCHHHH
LKNMCGLWMIQECKRIWEREGLDISYSEISKAAMEVDSFIFNVNPDDPRFLNPKNMPLAI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCCCEECCCCCCHHH
KEYCQETEQQIPCNYAEMARGIYESLALNYKRVIDKLEKIVGVKIDKIHMVGGGIKAEIL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEE
CQFTANVTGKTVIAGPVEATAMGNILAQLMARGEIKNLKEGREIIKNSVELKHYNP
EEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNEYLNLLAIDLGASNGRAIIGKYDGNKIKLEEVHKFKNGPERVTNNLYWDILRLFHEVK
CCCCEEEEEEEECCCCCCEEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TGITKASEFTDYNISSLGIDTWGVDYGLLDREGNLLSNPYHYRDNRTDGLLKEIYKKVSK
HHHCCHHHCCCCCCHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KRIYQLTGIQFMQLNTLVQLYADLKYRPWVLNNAKSLLFTPDLINYFLTGKKYNEFTISS
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEECHHHHHHHHCCCCCCEEEECC
TSQLLNPLTEKWEHELFEELDIPSNIVETLIYPGTKIGNIIPEVKEECGLRGDLPVIAVG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEC
SHDTASAVAATPLEDNKNSIYISSGTWSLLGMELDQPIINEKSLKENFTNECGVGKKITF
CCCCCHHEEECCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHCCHHCCCCCHHHH
LKNMCGLWMIQECKRIWEREGLDISYSEISKAAMEVDSFIFNVNPDDPRFLNPKNMPLAI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCCCEECCCCCCHHH
KEYCQETEQQIPCNYAEMARGIYESLALNYKRVIDKLEKIVGVKIDKIHMVGGGIKAEIL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEE
CQFTANVTGKTVIAGPVEATAMGNILAQLMARGEIKNLKEGREIIKNSVELKHYNP
EEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]