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The map label for this gene is amyC [H]

Identifier: 220931794

GI number: 220931794

Start: 1026661

End: 1027533

Strand: Direct

Name: amyC [H]

Synonym: Hore_09510

Alternate gene names: 220931794

Gene position: 1026661-1027533 (Clockwise)

Preceding gene: 220931793

Following gene: 220931795

Centisome position: 39.82

GC content: 34.02

Gene sequence:

>873_bases
ATGAGCAAGCATGGTTCTAGCAACAGTAACAAAAATGGAAGTGTCATTCATATAACTGTTAACAAATATGTCATTGGTAT
ATTAATGGGAATTGTTTCTGTAATCTGGTTTATTCCTATATATTTTATGATAATAAATTCTTTCAAACCATTCCGGGAGG
TATTGATGTATACTTCCCGGTTTCCTGAAAAGTTCAATTTAAATAATTTTGTTGAGGTCTGGGAAAAGGCTAATTACTTA
AAATTATTTACAAATTCAATTATAATTACATCAATATCCCTTCTGGGAATTGTTATTTTGGCATCAATGGCCGCATACAA
GCTAGCCCGTTCTCATGATAACGTAAGCAAAGGTCTGTTAGTATATTTTATTTTAACCCTGGTCATTCCTTTTCAGGCTG
TAATGATACCCCTGGTAAAAATCATGAAAGATATTAATGTTATAGATACCCGTATTGGAATTATACTGGTTTATATCGCA
CTGGGTTCACCCATGGCAATTTTTTTGTATTATGGGTATATTAAAACATTACCGATGTCGTTAGAAGAAGCAGCCCTTAT
TGATGGAGCCGGTGAGTTTCAAATATTTTTTAAAATAATATTTCCCCTGTTAAAACCAATCACCAGTACAGTAATTATTT
TACAATCTTTATGGATCTGGAATGATTTTTTACTACCCTTGATAACACTTCAATCTGAGGCAAATAAGACCATACCCCTG
GGAACAACAGCAACATTTATGGGCCAGTATACTCATCGCTGGGACCTGGCAATTACAGCCATGTTTCTGGCTTCATTGCC
TTTAATGGTATTGTATTTCTTTGTCCAGAAATATATAGTAAAGGGGATAGTAAAGGGTGCCATTAAAGGATAA

Upstream 100 bases:

>100_bases
GACTGGGTTATGCCAATGCAAAAGCGATAGTTTTAACAATTATAATTGTAATTATTACTGTAATTCACTTCCGTATTACT
TCCCGGGAGGAGGTAAAGAT

Downstream 100 bases:

>100_bases
AAATTTTTAAGTTAACTATTTTGTTTATACCTTTATAATTGTCTATATAGTAAAAAAACCGCCTTTAAAGGCGGTTTTAA
TATTTTTACAGGGTTATTTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSKHGSSNSNKNGSVIHITVNKYVIGILMGIVSVIWFIPIYFMIINSFKPFREVLMYTSRFPEKFNLNNFVEVWEKANYL
KLFTNSIIITSISLLGIVILASMAAYKLARSHDNVSKGLLVYFILTLVIPFQAVMIPLVKIMKDINVIDTRIGIILVYIA
LGSPMAIFLYYGYIKTLPMSLEEAALIDGAGEFQIFFKIIFPLLKPITSTVIILQSLWIWNDFLLPLITLQSEANKTIPL
GTTATFMGQYTHRWDLAITAMFLASLPLMVLYFFVQKYIVKGIVKGAIKG

Sequences:

>Translated_290_residues
MSKHGSSNSNKNGSVIHITVNKYVIGILMGIVSVIWFIPIYFMIINSFKPFREVLMYTSRFPEKFNLNNFVEVWEKANYL
KLFTNSIIITSISLLGIVILASMAAYKLARSHDNVSKGLLVYFILTLVIPFQAVMIPLVKIMKDINVIDTRIGIILVYIA
LGSPMAIFLYYGYIKTLPMSLEEAALIDGAGEFQIFFKIIFPLLKPITSTVIILQSLWIWNDFLLPLITLQSEANKTIPL
GTTATFMGQYTHRWDLAITAMFLASLPLMVLYFFVQKYIVKGIVKGAIKG
>Mature_289_residues
SKHGSSNSNKNGSVIHITVNKYVIGILMGIVSVIWFIPIYFMIINSFKPFREVLMYTSRFPEKFNLNNFVEVWEKANYLK
LFTNSIIITSISLLGIVILASMAAYKLARSHDNVSKGLLVYFILTLVIPFQAVMIPLVKIMKDINVIDTRIGIILVYIAL
GSPMAIFLYYGYIKTLPMSLEEAALIDGAGEFQIFFKIIFPLLKPITSTVIILQSLWIWNDFLLPLITLQSEANKTIPLG
TTATFMGQYTHRWDLAITAMFLASLPLMVLYFFVQKYIVKGIVKGAIKG

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=260, Percent_Identity=26.9230769230769, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789860, Length=237, Percent_Identity=25.7383966244726, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32771; Mature: 32640

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHGSSNSNKNGSVIHITVNKYVIGILMGIVSVIWFIPIYFMIINSFKPFREVLMYTSR
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
FPEKFNLNNFVEVWEKANYLKLFTNSIIITSISLLGIVILASMAAYKLARSHDNVSKGLL
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
VYFILTLVIPFQAVMIPLVKIMKDINVIDTRIGIILVYIALGSPMAIFLYYGYIKTLPMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
LEEAALIDGAGEFQIFFKIIFPLLKPITSTVIILQSLWIWNDFLLPLITLQSEANKTIPL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GTTATFMGQYTHRWDLAITAMFLASLPLMVLYFFVQKYIVKGIVKGAIKG
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKHGSSNSNKNGSVIHITVNKYVIGILMGIVSVIWFIPIYFMIINSFKPFREVLMYTSR
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
FPEKFNLNNFVEVWEKANYLKLFTNSIIITSISLLGIVILASMAAYKLARSHDNVSKGLL
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
VYFILTLVIPFQAVMIPLVKIMKDINVIDTRIGIILVYIALGSPMAIFLYYGYIKTLPMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
LEEAALIDGAGEFQIFFKIIFPLLKPITSTVIILQSLWIWNDFLLPLITLQSEANKTIPL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GTTATFMGQYTHRWDLAITAMFLASLPLMVLYFFVQKYIVKGIVKGAIKG
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]