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The map label for this gene is amyD [H]

Identifier: 220931793

GI number: 220931793

Start: 1025774

End: 1026664

Strand: Direct

Name: amyD [H]

Synonym: Hore_09500

Alternate gene names: 220931793

Gene position: 1025774-1026664 (Clockwise)

Preceding gene: 220931792

Following gene: 220931794

Centisome position: 39.79

GC content: 34.12

Gene sequence:

>891_bases
ATGTTTCTTGCAGATAGGTCAAAACGCCGAAAAATCTATTTGTTTCTGGCCTTTGTTGGTCCTATATTTGTGTTATATAC
CTTATTTTTTATCCTGCCCCTGTTTGAAGGGATATATTATTCCTTTACTGATTGGAAGGGGGTAGGGGGTAGTATAAACT
GGGTTGGTTTTGATAATTATATAAACCTGTTTAAGATAGATGATGTGTTTATAAATTCCATAAATACAACTTTTTATATT
GCTTTTGTTAATGTTTTATTAACAAATATCCTGGCTATGATTTTTGCCATTGCTTTAACTAATAATTTTAAACTAAATAA
TCTATACAGGGGGATAATACTCCTTCCCAACATGATTAGTATGGTTGTTTCGGGTTTTATCTGGAAATTTATGTTTTCTA
AAATATCAGGGAGCTTATATGAGGCCACAGGAATTGAATTGTTCAATAATAGTTGGCTTGGAGATATTGAGATTGTTATC
TATTCAGTGGTAATTGTTAGCCTGTGGCAGGGACTGGGATACATAATGACCATTTATATTGCGGCCCTGCAGGGTGTTGA
TGAAAATGTTATTGAGGCTGCTTCAATAGATGGTGCAAATTCATGGCAGATATTCTTTAAAATAAAACTGCCATTAATGC
TTCCCATTGTATCTATTGGTGCCTTTCTCAATATATCAATGTCTCTTAAAATATTTGATATAATATATTCTTTGACCGGG
GGTGGACCAGGCCATGCTTCTGAAGTAGCCATGTTAAATATTTATCGGGAGGCTTTTGTCTTTAACCGACTGGGTTATGC
CAATGCAAAAGCGATAGTTTTAACAATTATAATTGTAATTATTACTGTAATTCACTTCCGTATTACTTCCCGGGAGGAGG
TAAAGATATGA

Upstream 100 bases:

>100_bases
TGCAGAATGGTTTAAATCTATGGATAAATAACTGATAAAAAATATGAATTAATACATTATTTAATTTTTATCAATAAGGT
AATATCCAGGAGGAAAGTTT

Downstream 100 bases:

>100_bases
GCAAGCATGGTTCTAGCAACAGTAACAAAAATGGAAGTGTCATTCATATAACTGTTAACAAATATGTCATTGGTATATTA
ATGGGAATTGTTTCTGTAAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MFLADRSKRRKIYLFLAFVGPIFVLYTLFFILPLFEGIYYSFTDWKGVGGSINWVGFDNYINLFKIDDVFINSINTTFYI
AFVNVLLTNILAMIFAIALTNNFKLNNLYRGIILLPNMISMVVSGFIWKFMFSKISGSLYEATGIELFNNSWLGDIEIVI
YSVVIVSLWQGLGYIMTIYIAALQGVDENVIEAASIDGANSWQIFFKIKLPLMLPIVSIGAFLNISMSLKIFDIIYSLTG
GGPGHASEVAMLNIYREAFVFNRLGYANAKAIVLTIIIVIITVIHFRITSREEVKI

Sequences:

>Translated_296_residues
MFLADRSKRRKIYLFLAFVGPIFVLYTLFFILPLFEGIYYSFTDWKGVGGSINWVGFDNYINLFKIDDVFINSINTTFYI
AFVNVLLTNILAMIFAIALTNNFKLNNLYRGIILLPNMISMVVSGFIWKFMFSKISGSLYEATGIELFNNSWLGDIEIVI
YSVVIVSLWQGLGYIMTIYIAALQGVDENVIEAASIDGANSWQIFFKIKLPLMLPIVSIGAFLNISMSLKIFDIIYSLTG
GGPGHASEVAMLNIYREAFVFNRLGYANAKAIVLTIIIVIITVIHFRITSREEVKI
>Mature_296_residues
MFLADRSKRRKIYLFLAFVGPIFVLYTLFFILPLFEGIYYSFTDWKGVGGSINWVGFDNYINLFKIDDVFINSINTTFYI
AFVNVLLTNILAMIFAIALTNNFKLNNLYRGIILLPNMISMVVSGFIWKFMFSKISGSLYEATGIELFNNSWLGDIEIVI
YSVVIVSLWQGLGYIMTIYIAALQGVDENVIEAASIDGANSWQIFFKIKLPLMLPIVSIGAFLNISMSLKIFDIIYSLTG
GGPGHASEVAMLNIYREAFVFNRLGYANAKAIVLTIIIVIITVIHFRITSREEVKI

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=287, Percent_Identity=29.9651567944251, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787570, Length=231, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790465, Length=254, Percent_Identity=24.0157480314961, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33463; Mature: 33463

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLADRSKRRKIYLFLAFVGPIFVLYTLFFILPLFEGIYYSFTDWKGVGGSINWVGFDNY
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCC
INLFKIDDVFINSINTTFYIAFVNVLLTNILAMIFAIALTNNFKLNNLYRGIILLPNMIS
EEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MVVSGFIWKFMFSKISGSLYEATGIELFNNSWLGDIEIVIYSVVIVSLWQGLGYIMTIYI
HHHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AALQGVDENVIEAASIDGANSWQIFFKIKLPLMLPIVSIGAFLNISMSLKIFDIIYSLTG
HHHHCCCHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHEEHHHHHHHHHHHCC
GGPGHASEVAMLNIYREAFVFNRLGYANAKAIVLTIIIVIITVIHFRITSREEVKI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFLADRSKRRKIYLFLAFVGPIFVLYTLFFILPLFEGIYYSFTDWKGVGGSINWVGFDNY
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCC
INLFKIDDVFINSINTTFYIAFVNVLLTNILAMIFAIALTNNFKLNNLYRGIILLPNMIS
EEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MVVSGFIWKFMFSKISGSLYEATGIELFNNSWLGDIEIVIYSVVIVSLWQGLGYIMTIYI
HHHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AALQGVDENVIEAASIDGANSWQIFFKIKLPLMLPIVSIGAFLNISMSLKIFDIIYSLTG
HHHHCCCHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHEEHHHHHHHHHHHCC
GGPGHASEVAMLNIYREAFVFNRLGYANAKAIVLTIIIVIITVIHFRITSREEVKI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]