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The map label for this gene is rnhB [H]

Identifier: 220931581

GI number: 220931581

Start: 794465

End: 795391

Strand: Direct

Name: rnhB [H]

Synonym: Hore_07370

Alternate gene names: 220931581

Gene position: 794465-795391 (Clockwise)

Preceding gene: 220931580

Following gene: 220931582

Centisome position: 30.82

GC content: 37.43

Gene sequence:

>927_bases
GTGGATTTTAGTGAGTTAACAATTAAGGAAATTGATTTATACCTCAAAAAGGTTAAGGTTGATGATAACATAATTAAAAA
GCTTGAAGAAGATCCCCGAAAAGGTGTAAAAAAGCTGGCTACCCGCTATAAAAGAATTAGGGAAAAAGAACAGGAGATAA
AAAGGCGCTGGGAAGAAATGAACAGTCTTCAGAACAACCTTTTTAAAGAAGGTTTCCACTTTATTGCCGGGGTTGATGAG
GCCGGTCGTGGGCCTCTGGCTGGTCCTGTAGTGGCCGCAGCAGTTGTTTTTAAACCGGAAACCAAAGTTTTAGGACTCGA
TGATTCTAAAAAACTAACTGCAAAAGAGAGGGAAACTCTGTTTGAAGAGATATACGATAGAGCTCTTTCAATCGGGGTTG
GTATTGTCGATAATAAGGATATAGATAAATTAAATATCCTTAATGCAAGCCTGAAGGCTATGAAAAAGGCCCTTGATAGC
CTTTCATGTCCTGTTGATTATATATTAATTGATGGAAAAAATAAACTATCGGAACTGAATATTAAACAACAGGCAGTTAT
TGATGGTGATAATAAGGTTAATGTTATTGCAGCGGCTTCAATTATTGCCAAAGTGACACGGGACAGGATCCTGGACAAAT
TACATAAAAAATACCCTGAGTATGGATTTATTAATAATAAGGGTTACGGTACCCGGGAACATATTGAGGCCCTAAAAGCA
TACGGACCATCCCCTATTCATCGCTATTCATTTTCCCTGGTACGGGAATACTGCCTGTTAACATATAAGGAAAGACTACG
TAAAGCTACTTCAGAAGATGAACTTATTCAAATAGGAAAAGATATAGACAGGCTAACAGGTATTAGTGACAGAGAACTTG
ATTATTTGAGAAATATTTACCGGAACAGATACCGGGAGATTAAATAA

Upstream 100 bases:

>100_bases
CGGTAAGATTGATAGACACAAAACCAGTGAGATTATTTTAAATGATTTCAGACGTGGTAAGATGGGTCGAATTACCCTTG
AAAAACCGGAGTTGATATAG

Downstream 100 bases:

>100_bases
ATATTATTATTTAAAAGTTGACTATATGTTTTTCACCCGGGCATATATTATCATTAATTAATATTAAGGCACAGAAACTT
TACTATAGTTATTATAACTA

Product: Ribonuclease H

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDFSELTIKEIDLYLKKVKVDDNIIKKLEEDPRKGVKKLATRYKRIREKEQEIKRRWEEMNSLQNNLFKEGFHFIAGVDE
AGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETLFEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDS
LSCPVDYILIDGKNKLSELNIKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKA
YGPSPIHRYSFSLVREYCLLTYKERLRKATSEDELIQIGKDIDRLTGISDRELDYLRNIYRNRYREIK

Sequences:

>Translated_308_residues
MDFSELTIKEIDLYLKKVKVDDNIIKKLEEDPRKGVKKLATRYKRIREKEQEIKRRWEEMNSLQNNLFKEGFHFIAGVDE
AGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETLFEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDS
LSCPVDYILIDGKNKLSELNIKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKA
YGPSPIHRYSFSLVREYCLLTYKERLRKATSEDELIQIGKDIDRLTGISDRELDYLRNIYRNRYREIK
>Mature_308_residues
MDFSELTIKEIDLYLKKVKVDDNIIKKLEEDPRKGVKKLATRYKRIREKEQEIKRRWEEMNSLQNNLFKEGFHFIAGVDE
AGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETLFEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDS
LSCPVDYILIDGKNKLSELNIKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKA
YGPSPIHRYSFSLVREYCLLTYKERLRKATSEDELIQIGKDIDRLTGISDRELDYLRNIYRNRYREIK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=182, Percent_Identity=47.2527472527472, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 35451; Mature: 35451

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSELTIKEIDLYLKKVKVDDNIIKKLEEDPRKGVKKLATRYKRIREKEQEIKRRWEEM
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLQNNLFKEGFHFIAGVDEAGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETL
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHH
FEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKNKLSELN
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCC
IKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKA
CHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
YGPSPIHRYSFSLVREYCLLTYKERLRKATSEDELIQIGKDIDRLTGISDRELDYLRNIY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RNRYREIK
HHHHHCCC
>Mature Secondary Structure
MDFSELTIKEIDLYLKKVKVDDNIIKKLEEDPRKGVKKLATRYKRIREKEQEIKRRWEEM
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLQNNLFKEGFHFIAGVDEAGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETL
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHH
FEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKNKLSELN
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCC
IKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKA
CHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
YGPSPIHRYSFSLVREYCLLTYKERLRKATSEDELIQIGKDIDRLTGISDRELDYLRNIY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RNRYREIK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA