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The map label for this gene is cspC [H]

Identifier: 220931385

GI number: 220931385

Start: 587030

End: 587233

Strand: Direct

Name: cspC [H]

Synonym: Hore_05400

Alternate gene names: 220931385

Gene position: 587030-587233 (Clockwise)

Preceding gene: 220931380

Following gene: 220931388

Centisome position: 22.77

GC content: 37.25

Gene sequence:

>204_bases
ATGGTTTACACAGGAAAAGTAAAATGGTTTGATGCAAAAAAAGGTTATGGATTTATCGAAAGAGAAGATGGAGATGACGT
ATTTGTACATTTTTCCGCTATTCAGGCTGATGGATTTAAGAGCCTTGAAGATGGAGAAGAAGTAGAATTCGAAATTATCG
AAGGTGATCGTGGACCACAGGCCGCCAATGTTGTTACTTTATAA

Upstream 100 bases:

>100_bases
ATTGACAATAACAATATAGTGTGATAAGCTTATAATCAATGGGTATTAAAATTTAATGAGTACTTACCCATGGTAAAAAT
TTTAAGGAGGAATTTATTTA

Downstream 100 bases:

>100_bases
TATAAAGTAAACAATCCCTGGTTTCTTTAATTAAAGAAACCAGGGTTTTTAAATTTGAATATATTATAAATTTAAATATA
ACCATATATTTAAGGGACAG

Product: putative cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MVYTGKVKWFDAKKGYGFIEREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGDRGPQAANVVTL

Sequences:

>Translated_67_residues
MVYTGKVKWFDAKKGYGFIEREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGDRGPQAANVVTL
>Mature_67_residues
MVYTGKVKWFDAKKGYGFIEREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGDRGPQAANVVTL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=49.2307692307692, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=50, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=50, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=50, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=64.0625, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=61.5384615384615, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=61.5384615384615, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=58.4615384615385, Blast_Score=77, Evalue=1e-16,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=58.7301587301587, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=43.75, Blast_Score=65, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508335, Length=67, Percent_Identity=47.7611940298507, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17533635, Length=66, Percent_Identity=50, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24658520, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24663131, Length=67, Percent_Identity=53.7313432835821, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7502; Mature: 7502

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYTGKVKWFDAKKGYGFIEREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGDRGPQ
CEECCCEEEEECCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCC
AANVVTL
CEEEEEC
>Mature Secondary Structure
MVYTGKVKWFDAKKGYGFIEREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGDRGPQ
CEECCCEEEEECCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCC
AANVVTL
CEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]