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The map label for this gene is carC [H]

Identifier: 220931377

GI number: 220931377

Start: 579449

End: 580165

Strand: Direct

Name: carC [H]

Synonym: Hore_05325

Alternate gene names: 220931377

Gene position: 579449-580165 (Clockwise)

Preceding gene: 220931376

Following gene: 220931378

Centisome position: 22.48

GC content: 36.12

Gene sequence:

>717_bases
ATGAATGCTGATTTTGCCTGGGGTTTGCAAAACCTGATTCCTGATCAAAAGAGGCAAAAATATAATAATCAAAAGCTGGA
AGGAAAAAAATATTCCTGTTCTACCTTTATGTTATATCTTGGCCTGGATAAAAAATATGATCACCTCCTTCATAATAATG
TATTTATATCCGGTGATTATAAAAATAATTTTATGGAGATAGAGGAAAGTAAGGTTTTATCAAGGGATCCATCATTTTAT
GTCCAAAATGCTTCTGTAACCGATCCTTCCCTTGCCCCTGATGGGCATTCAGCCTTATATGTTCTTGTGCCAGTTCCCAA
TCTCAGATCAAATATTGACTGGTCCCGGAAAACCGGTAGTTTCCGTAATACTGTAATTAAGCTCCTGGAAGATAGAGCAG
GATTAACTGATATAAAAGACCATATTAAATATGAAAAAATGATTACTCCCCTTGATTGGAAGGAAGAATTACATGTGGGG
TTTGGAGCTACATTTAATCTGGCCCATAACCTCAACCAGATGCTTTATTTTAGACCCCATAATAAGTTCGAAGAATTTGA
TAATATGTGGCTGGTTGGTGGGGGAACCAATCCGGGAAGTGGCTTGCCTACTATTTATGAATCAGGACGGATTACAGCCA
ATATTATGTGTAATAAATATAAACTCAACTATAAAGAGGTAAATATTCAACATAATACATATTCCCTGCAGGGTTAA

Upstream 100 bases:

>100_bases
TTAAACTAAATAAAGAAGTAGCTGAGATAGATATTGTTAATAAAAAGCCCATGGTTTGCATTTTAAAGATGGGGATTATA
AAAAGTTCGACGAGATAGTT

Downstream 100 bases:

>100_bases
TATTAAATATATATTTTTTAAAATATGTTGACATATAAAAAAAATAATAATAAAATTAATATTAATAAAAACTGAGGAGA
ATCCTGGATGATAATACCTG

Product: Phytoene dehydrogenase C terminal region

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MNADFAWGLQNLIPDQKRQKYNNQKLEGKKYSCSTFMLYLGLDKKYDHLLHNNVFISGDYKNNFMEIEESKVLSRDPSFY
VQNASVTDPSLAPDGHSALYVLVPVPNLRSNIDWSRKTGSFRNTVIKLLEDRAGLTDIKDHIKYEKMITPLDWKEELHVG
FGATFNLAHNLNQMLYFRPHNKFEEFDNMWLVGGGTNPGSGLPTIYESGRITANIMCNKYKLNYKEVNIQHNTYSLQG

Sequences:

>Translated_238_residues
MNADFAWGLQNLIPDQKRQKYNNQKLEGKKYSCSTFMLYLGLDKKYDHLLHNNVFISGDYKNNFMEIEESKVLSRDPSFY
VQNASVTDPSLAPDGHSALYVLVPVPNLRSNIDWSRKTGSFRNTVIKLLEDRAGLTDIKDHIKYEKMITPLDWKEELHVG
FGATFNLAHNLNQMLYFRPHNKFEEFDNMWLVGGGTNPGSGLPTIYESGRITANIMCNKYKLNYKEVNIQHNTYSLQG
>Mature_238_residues
MNADFAWGLQNLIPDQKRQKYNNQKLEGKKYSCSTFMLYLGLDKKYDHLLHNNVFISGDYKNNFMEIEESKVLSRDPSFY
VQNASVTDPSLAPDGHSALYVLVPVPNLRSNIDWSRKTGSFRNTVIKLLEDRAGLTDIKDHIKYEKMITPLDWKEELHVG
FGATFNLAHNLNQMLYFRPHNKFEEFDNMWLVGGGTNPGSGLPTIYESGRITANIMCNKYKLNYKEVNIQHNTYSLQG

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.14.99.-

Molecular weight: Translated: 27439; Mature: 27439

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADFAWGLQNLIPDQKRQKYNNQKLEGKKYSCSTFMLYLGLDKKYDHLLHNNVFISGDY
CCCCHHCCHHHHCCCHHHHHHCCCCCCCCCEEEEEEEEEEECCCHHHHHHHCCEEEECCC
KNNFMEIEESKVLSRDPSFYVQNASVTDPSLAPDGHSALYVLVPVPNLRSNIDWSRKTGS
CCCCEEECHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
FRNTVIKLLEDRAGLTDIKDHIKYEKMITPLDWKEELHVGFGATFNLAHNLNQMLYFRPH
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHEEECCCCEEHHHHCCCEEEEECCC
NKFEEFDNMWLVGGGTNPGSGLPTIYESGRITANIMCNKYKLNYKEVNIQHNTYSLQG
CHHHHHCCEEEEECCCCCCCCCCCEECCCCEEEEEEEEEEEECEEEEEEEECEEEECC
>Mature Secondary Structure
MNADFAWGLQNLIPDQKRQKYNNQKLEGKKYSCSTFMLYLGLDKKYDHLLHNNVFISGDY
CCCCHHCCHHHHCCCHHHHHHCCCCCCCCCEEEEEEEEEEECCCHHHHHHHCCEEEECCC
KNNFMEIEESKVLSRDPSFYVQNASVTDPSLAPDGHSALYVLVPVPNLRSNIDWSRKTGS
CCCCEEECHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
FRNTVIKLLEDRAGLTDIKDHIKYEKMITPLDWKEELHVGFGATFNLAHNLNQMLYFRPH
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHEEECCCCEEHHHHCCCEEEEECCC
NKFEEFDNMWLVGGGTNPGSGLPTIYESGRITANIMCNKYKLNYKEVNIQHNTYSLQG
CHHHHHCCEEEEECCCCCCCCCCCEECCCCEEEEEEEEEEEECEEEEEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8467787 [H]