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The map label for this gene is carC [H]

Identifier: 220931376

GI number: 220931376

Start: 578634

End: 579446

Strand: Direct

Name: carC [H]

Synonym: Hore_05320

Alternate gene names: 220931376

Gene position: 578634-579446 (Clockwise)

Preceding gene: 220931375

Following gene: 220931377

Centisome position: 22.44

GC content: 36.41

Gene sequence:

>813_bases
ATGGCTAAGGTAGGTATTATTGGGGCAGGACCGGGTGGTCTGGCTGCTGCTTTATTACTGGCAAACAGGGGTTTTGAGGT
AGAGGTTTTTGAAAAAGAAAATAAAATTGGGGGAAGAAACAGTTATATTAAAGAGGAGGGTTATACTTTTGATATTGGTC
CTACCTTTTTTATGATGCCCTTTATTCTGGAAAGAATATTTCAGGAAACAGGTCGTAACTTAAACGATTATGTGGATTTG
AAATTACTGGAACCTTACTATCAACTTGTTTTTAAAGATGGCAAAAGATTTTATCCATCCAGAAATAGAGATCGGGTAAA
GGATTCTATTGCAAAAATAAGTCCTGATGATGCATCTGGGTTTGATTTATATATGAAGGATAACAAAAAAAAGATGGACA
GGACCCTGCCTGCCCTCCAGCGTGGTTATCATAAATTTTATCACCTTTTAAGTAAAGAAGTCCTTAACCTTCTACCGGTA
CTGAGGCCCTGGGAAAGCCTCTGGGATAATTTAAATAAGTATTTTTCTGATGACAGGGTCAAGCTGGGTTTTACTTTTCA
ATCTAAGTATCTTGGTATGTCACCATATAATTGTCCTTCTTTGTTTAGTATTTTACCCTATACAGAATATAAATGGGGTG
TTTACCATGTTATGGGGGGATTACATAAATTAACTAAAGCTATGGCTGACGTAACCCGGGAGTTGGGTGGGAAAATTAAA
CTAAATAAAGAAGTAGCTGAGATAGATATTGTTAATAAAAAGCCCATGGTTTGCATTTTAAAGATGGGGATTATAAAAAG
TTCGACGAGATAG

Upstream 100 bases:

>100_bases
GTACAGTCCATGACCTGTGGGAAAATAATTTGTAAAATAAATAAGGTAAAATAATTATGGGCCAGCTTGAGGCTGGCCCT
TTTAAATAAGGAGGAATAAG

Downstream 100 bases:

>100_bases
TTATGAATGCTGATTTTGCCTGGGGTTTGCAAAACCTGATTCCTGATCAAAAGAGGCAAAAATATAATAATCAAAAGCTG
GAAGGAAAAAAATATTCCTG

Product: Phytoene dehydrogenase N terminal region

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAKVGIIGAGPGGLAAALLLANRGFEVEVFEKENKIGGRNSYIKEEGYTFDIGPTFFMMPFILERIFQETGRNLNDYVDL
KLLEPYYQLVFKDGKRFYPSRNRDRVKDSIAKISPDDASGFDLYMKDNKKKMDRTLPALQRGYHKFYHLLSKEVLNLLPV
LRPWESLWDNLNKYFSDDRVKLGFTFQSKYLGMSPYNCPSLFSILPYTEYKWGVYHVMGGLHKLTKAMADVTRELGGKIK
LNKEVAEIDIVNKKPMVCILKMGIIKSSTR

Sequences:

>Translated_270_residues
MAKVGIIGAGPGGLAAALLLANRGFEVEVFEKENKIGGRNSYIKEEGYTFDIGPTFFMMPFILERIFQETGRNLNDYVDL
KLLEPYYQLVFKDGKRFYPSRNRDRVKDSIAKISPDDASGFDLYMKDNKKKMDRTLPALQRGYHKFYHLLSKEVLNLLPV
LRPWESLWDNLNKYFSDDRVKLGFTFQSKYLGMSPYNCPSLFSILPYTEYKWGVYHVMGGLHKLTKAMADVTRELGGKIK
LNKEVAEIDIVNKKPMVCILKMGIIKSSTR
>Mature_269_residues
AKVGIIGAGPGGLAAALLLANRGFEVEVFEKENKIGGRNSYIKEEGYTFDIGPTFFMMPFILERIFQETGRNLNDYVDLK
LLEPYYQLVFKDGKRFYPSRNRDRVKDSIAKISPDDASGFDLYMKDNKKKMDRTLPALQRGYHKFYHLLSKEVLNLLPVL
RPWESLWDNLNKYFSDDRVKLGFTFQSKYLGMSPYNCPSLFSILPYTEYKWGVYHVMGGLHKLTKAMADVTRELGGKIKL
NKEVAEIDIVNKKPMVCILKMGIIKSSTR

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.14.99.-

Molecular weight: Translated: 31041; Mature: 30909

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVGIIGAGPGGLAAALLLANRGFEVEVFEKENKIGGRNSYIKEEGYTFDIGPTFFMMP
CCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHH
FILERIFQETGRNLNDYVDLKLLEPYYQLVFKDGKRFYPSRNRDRVKDSIAKISPDDASG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
FDLYMKDNKKKMDRTLPALQRGYHKFYHLLSKEVLNLLPVLRPWESLWDNLNKYFSDDRV
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCE
KLGFTFQSKYLGMSPYNCPSLFSILPYTEYKWGVYHVMGGLHKLTKAMADVTRELGGKIK
EEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
LNKEVAEIDIVNKKPMVCILKMGIIKSSTR
ECCCEEEEEECCCCCCEEEEEHHHHCCCCC
>Mature Secondary Structure 
AKVGIIGAGPGGLAAALLLANRGFEVEVFEKENKIGGRNSYIKEEGYTFDIGPTFFMMP
CCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHH
FILERIFQETGRNLNDYVDLKLLEPYYQLVFKDGKRFYPSRNRDRVKDSIAKISPDDASG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
FDLYMKDNKKKMDRTLPALQRGYHKFYHLLSKEVLNLLPVLRPWESLWDNLNKYFSDDRV
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCE
KLGFTFQSKYLGMSPYNCPSLFSILPYTEYKWGVYHVMGGLHKLTKAMADVTRELGGKIK
EEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
LNKEVAEIDIVNKKPMVCILKMGIIKSSTR
ECCCEEEEEECCCCCCEEEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8467787 [H]