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The map label for this gene is yebA [H]

Identifier: 220931329

GI number: 220931329

Start: 521261

End: 522520

Strand: Direct

Name: yebA [H]

Synonym: Hore_04840

Alternate gene names: 220931329

Gene position: 521261-522520 (Clockwise)

Preceding gene: 220931327

Following gene: 220931330

Centisome position: 20.22

GC content: 39.68

Gene sequence:

>1260_bases
TTGAAACGAATATTTGTCATACTTTTCATATTAGTTGTTATATTGACAGTGCCTACCGTAAACTACCTTCAGGGAGAACA
TGAATCAGATAATGGTGAAAGTATTGTTGCTGGTAATAGCAGTCAGATTGGTCACAGTGAAAACACCCCTGTATCTGATA
GTTCAACTTTAAAAGATACCGGGACAGGTATTGATAAGGTTAATAATAGCAATCATATAATAAATAATAATTCTGATAGT
AATATTGATTCCAGAAATAATAATAATAATAAAGTTAATTCCAGTAATAAAGCCAGTTCTGGTTTGAATGAGAATAATTT
TTCTGCTGGATCTGATGGAATCAGAGATGATAATGATGACGACAATGACAGTTTTGTTAATAATGGGAAAGTTAATGAGG
GAGTTAATACTGATGGTAAGGTAAATAAGTCATCAACTGATTTAAAAGTTGAGATTACAGGTGTTGGCGGTCCGGACAAC
CTGCAGCCAGGAAAAAATAACAATGATGACCGTGTATTGGTTGGAGAGGCCCGGCCCAGGATTGAACTGCCCCTTATGGA
CAGGATAAAAAAACACAGGGTCAGGAAGGGTGACACCCTGTGGACAATTGCCCGGAAATATGATATAGATATTGATACCC
TTATCGGGGGCAATGATATTACCAATATGAATAGAATAAAACCTGGAGACGTTTTGAATATATTACCTGTTAAAGGGATT
TTATATAAAATCTCGCCAGGGGAGTCATTATGGGAGATTTCACGTAAATTTGACGTCAGTATGGACAGGATTGCAGAGGC
CAATAATATTCAGAATCCGGACCTTGTTCAGATAGGGACTCTACTCATATTACCTGGAGCTAAACCAGAATTTAGTTACC
AGGACAGGCTTAATAGTAAGTTAATTAAACCGGTTCATGCCCGAATTTCTTCCTATTATGGTATGAGGTGGGGAAGGATG
CATGAGGGAATCGATTATGCTGTTCCCACTGGAACCAGAATCAGGGCAGCCAGTCACGGAAAGGTGGTTTATAGTGGTTG
GGCCCGTGGTTATGGTCTGACTATTATCATTGAACACCGCAAGGGTTTTAGAACCCTGTATGCTCATAATTCTAAACTCC
TGGCCCGGAGTGGAGAATGGGTAAACAGGGGAGAGGTTATAGCCCTTTCGGGTAATACCGGACGCTCAACAGGCCCCCAT
CTTCATTTCGAAGTTCAGGTCAATGGAAGGCCCGTTAATCCACTTAATTATTTAAAGTAG

Upstream 100 bases:

>100_bases
TAAGCTATAGTAAGGGGAAAAGGTTGTCTGGATATGGTTAACGGGCTTTTTTATACCTGATATTTTACAGGGGTCAATAC
AATAATAGGGGTTGGTATTT

Downstream 100 bases:

>100_bases
GACCAGATTAAATATTTATAGTTAAAACAAACAAAGTAGAGAACAGGTTAAAAGTAAATACCTCTATGTAAAATAGACCC
GGTTGTCAAAATGCTGACCG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKRIFVILFILVVILTVPTVNYLQGEHESDNGESIVAGNSSQIGHSENTPVSDSSTLKDTGTGIDKVNNSNHIINNNSDS
NIDSRNNNNNKVNSSNKASSGLNENNFSAGSDGIRDDNDDDNDSFVNNGKVNEGVNTDGKVNKSSTDLKVEITGVGGPDN
LQPGKNNNDDRVLVGEARPRIELPLMDRIKKHRVRKGDTLWTIARKYDIDIDTLIGGNDITNMNRIKPGDVLNILPVKGI
LYKISPGESLWEISRKFDVSMDRIAEANNIQNPDLVQIGTLLILPGAKPEFSYQDRLNSKLIKPVHARISSYYGMRWGRM
HEGIDYAVPTGTRIRAASHGKVVYSGWARGYGLTIIIEHRKGFRTLYAHNSKLLARSGEWVNRGEVIALSGNTGRSTGPH
LHFEVQVNGRPVNPLNYLK

Sequences:

>Translated_419_residues
MKRIFVILFILVVILTVPTVNYLQGEHESDNGESIVAGNSSQIGHSENTPVSDSSTLKDTGTGIDKVNNSNHIINNNSDS
NIDSRNNNNNKVNSSNKASSGLNENNFSAGSDGIRDDNDDDNDSFVNNGKVNEGVNTDGKVNKSSTDLKVEITGVGGPDN
LQPGKNNNDDRVLVGEARPRIELPLMDRIKKHRVRKGDTLWTIARKYDIDIDTLIGGNDITNMNRIKPGDVLNILPVKGI
LYKISPGESLWEISRKFDVSMDRIAEANNIQNPDLVQIGTLLILPGAKPEFSYQDRLNSKLIKPVHARISSYYGMRWGRM
HEGIDYAVPTGTRIRAASHGKVVYSGWARGYGLTIIIEHRKGFRTLYAHNSKLLARSGEWVNRGEVIALSGNTGRSTGPH
LHFEVQVNGRPVNPLNYLK
>Mature_419_residues
MKRIFVILFILVVILTVPTVNYLQGEHESDNGESIVAGNSSQIGHSENTPVSDSSTLKDTGTGIDKVNNSNHIINNNSDS
NIDSRNNNNNKVNSSNKASSGLNENNFSAGSDGIRDDNDDDNDSFVNNGKVNEGVNTDGKVNKSSTDLKVEITGVGGPDN
LQPGKNNNDDRVLVGEARPRIELPLMDRIKKHRVRKGDTLWTIARKYDIDIDTLIGGNDITNMNRIKPGDVLNILPVKGI
LYKISPGESLWEISRKFDVSMDRIAEANNIQNPDLVQIGTLLILPGAKPEFSYQDRLNSKLIKPVHARISSYYGMRWGRM
HEGIDYAVPTGTRIRAASHGKVVYSGWARGYGLTIIIEHRKGFRTLYAHNSKLLARSGEWVNRGEVIALSGNTGRSTGPH
LHFEVQVNGRPVNPLNYLK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=136, Percent_Identity=39.7058823529412, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87082174, Length=206, Percent_Identity=31.5533980582524, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789099, Length=116, Percent_Identity=42.2413793103448, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87082297, Length=104, Percent_Identity=36.5384615384615, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 46200; Mature: 46200

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIFVILFILVVILTVPTVNYLQGEHESDNGESIVAGNSSQIGHSENTPVSDSSTLKDT
CHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
GTGIDKVNNSNHIINNNSDSNIDSRNNNNNKVNSSNKASSGLNENNFSAGSDGIRDDNDD
CCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
DNDSFVNNGKVNEGVNTDGKVNKSSTDLKVEITGVGGPDNLQPGKNNNDDRVLVGEARPR
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCC
IELPLMDRIKKHRVRKGDTLWTIARKYDIDIDTLIGGNDITNMNRIKPGDVLNILPVKGI
EECCHHHHHHHHHCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECCEE
LYKISPGESLWEISRKFDVSMDRIAEANNIQNPDLVQIGTLLILPGAKPEFSYQDRLNSK
EEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHH
LIKPVHARISSYYGMRWGRMHEGIDYAVPTGTRIRAASHGKVVYSGWARGYGLTIIIEHR
HHHHHHHHHHHHHCCCCCHHHCCCCEECCCCCEEEECCCCCEEEECCCCCCCEEEEEECC
KGFRTLYAHNSKLLARSGEWVNRGEVIALSGNTGRSTGPHLHFEVQVNGRPVNPLNYLK
CCCEEEEECCCEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHCCC
>Mature Secondary Structure
MKRIFVILFILVVILTVPTVNYLQGEHESDNGESIVAGNSSQIGHSENTPVSDSSTLKDT
CHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
GTGIDKVNNSNHIINNNSDSNIDSRNNNNNKVNSSNKASSGLNENNFSAGSDGIRDDNDD
CCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
DNDSFVNNGKVNEGVNTDGKVNKSSTDLKVEITGVGGPDNLQPGKNNNDDRVLVGEARPR
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCC
IELPLMDRIKKHRVRKGDTLWTIARKYDIDIDTLIGGNDITNMNRIKPGDVLNILPVKGI
EECCHHHHHHHHHCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECCEE
LYKISPGESLWEISRKFDVSMDRIAEANNIQNPDLVQIGTLLILPGAKPEFSYQDRLNSK
EEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHH
LIKPVHARISSYYGMRWGRMHEGIDYAVPTGTRIRAASHGKVVYSGWARGYGLTIIIEHR
HHHHHHHHHHHHHCCCCCHHHCCCCEECCCCCEEEECCCCCEEEECCCCCCCEEEEEECC
KGFRTLYAHNSKLLARSGEWVNRGEVIALSGNTGRSTGPHLHFEVQVNGRPVNPLNYLK
CCCEEEEECCCEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]