Click here to switch to the map view.

The map label for this gene is 220931190

Identifier: 220931190

GI number: 220931190

Start: 355638

End: 356495

Strand: Reverse

Name: 220931190

Synonym: Hore_03420

Alternate gene names: NA

Gene position: 356495-355638 (Counterclockwise)

Preceding gene: 220931191

Following gene: 220931189

Centisome position: 13.83

GC content: 35.31

Gene sequence:

>858_bases
ATGCTCTTATTTGAAATTGAAAAACCATTTAATTCCCCTGATTACATTTTTGAACTAAAATGGGACGGCTACCGGGCCCT
GGCATTTATTAATGATAATAACCTCCTCTTACAGAGCCGCAACCAAAAAAACCTGACCCCATATTTTTCTGAATTAAAGT
CAATAACCTCATTGTTCAAAGGAACTAACGCAGTCCTTGATGGTGAAATATGCTACCTCAACAGGGATGGAAAACCTGTC
TTTGAAAAGCTGCAGGGCCGTATCTGGCAGAAAAAAAGTAATATTAAATACCCAGTGACATATATTACCTGGGATATCCT
GGGTTTAAATAATAATGATTTAACCAGGACACCCCTTCTTGAAAGAAAAAAAATACTGCAGAATTATATTCAGGAAAGTA
ACCGCTTAAAAAGGTCCAAATATATAAAAGAAAAGGGTAAAGAATTATATGAAATGGCCGAAGAAGAAGGACTGGAGGGA
ATTGTCGCCAAAAAGGTTAACTCTCCCTATGAATTTAAGCGGAGTAAATACTGGTACAAAATTAAAATCTGGCAGTATAC
AACGGCTGTAATTGTAGGCTTTACCAGGGATAAAGAGGCTTTATTAGTGGGAAAATATTTAAAAGATAATAATAAAATAT
CCTTTATGGGCAGGGTAAAAATAGCCCTGAATGAAGCTGAAAAAAAGGCCTTATTCCGTTTTTTACCTACTCTAAAAGTA
AAAAAACCCCCGTTTAAAGTCAGGCATAAACAGGGGATATCATGGGTAAAACCGGCTATTCAATGTAAAGTTAAGTATAC
TGAAATTACCAGTAACAATACTTTCCGGCATGGATTTGTGGTTAAACTTAAAATATAA

Upstream 100 bases:

>100_bases
ACCTGGTAATAAATAATTAAATTTACCTATAAGCGGGAGTTATTCCCGCTTATTTTTTCAGGAAGGATTTTTGAAAATGT
TAAAACCTCCCCTCCAGCCC

Downstream 100 bases:

>100_bases
AGGAAATATGAAGGAGTATATCAATTGAAGCTTACCATCGGTAAACACGATGTTCAATTAACCAATCTTGATAAGGTCCT
ATGGCCTGAACTGGGTTATA

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MLLFEIEKPFNSPDYIFELKWDGYRALAFINDNNLLLQSRNQKNLTPYFSELKSITSLFKGTNAVLDGEICYLNRDGKPV
FEKLQGRIWQKKSNIKYPVTYITWDILGLNNNDLTRTPLLERKKILQNYIQESNRLKRSKYIKEKGKELYEMAEEEGLEG
IVAKKVNSPYEFKRSKYWYKIKIWQYTTAVIVGFTRDKEALLVGKYLKDNNKISFMGRVKIALNEAEKKALFRFLPTLKV
KKPPFKVRHKQGISWVKPAIQCKVKYTEITSNNTFRHGFVVKLKI

Sequences:

>Translated_285_residues
MLLFEIEKPFNSPDYIFELKWDGYRALAFINDNNLLLQSRNQKNLTPYFSELKSITSLFKGTNAVLDGEICYLNRDGKPV
FEKLQGRIWQKKSNIKYPVTYITWDILGLNNNDLTRTPLLERKKILQNYIQESNRLKRSKYIKEKGKELYEMAEEEGLEG
IVAKKVNSPYEFKRSKYWYKIKIWQYTTAVIVGFTRDKEALLVGKYLKDNNKISFMGRVKIALNEAEKKALFRFLPTLKV
KKPPFKVRHKQGISWVKPAIQCKVKYTEITSNNTFRHGFVVKLKI
>Mature_285_residues
MLLFEIEKPFNSPDYIFELKWDGYRALAFINDNNLLLQSRNQKNLTPYFSELKSITSLFKGTNAVLDGEICYLNRDGKPV
FEKLQGRIWQKKSNIKYPVTYITWDILGLNNNDLTRTPLLERKKILQNYIQESNRLKRSKYIKEKGKELYEMAEEEGLEG
IVAKKVNSPYEFKRSKYWYKIKIWQYTTAVIVGFTRDKEALLVGKYLKDNNKISFMGRVKIALNEAEKKALFRFLPTLKV
KKPPFKVRHKQGISWVKPAIQCKVKYTEITSNNTFRHGFVVKLKI

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 33600; Mature: 33600

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLFEIEKPFNSPDYIFELKWDGYRALAFINDNNLLLQSRNQKNLTPYFSELKSITSLFK
CEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHC
GTNAVLDGEICYLNRDGKPVFEKLQGRIWQKKSNIKYPVTYITWDILGLNNNDLTRTPLL
CCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCHH
ERKKILQNYIQESNRLKRSKYIKEKGKELYEMAEEEGLEGIVAKKVNSPYEFKRSKYWYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCHHHHCCCEEEE
IKIWQYTTAVIVGFTRDKEALLVGKYLKDNNKISFMGRVKIALNEAEKKALFRFLPTLKV
EEEEEEEEEEEEEECCCCCEEEEEHHHCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCEE
KKPPFKVRHKQGISWVKPAIQCKVKYTEITSNNTFRHGFVVKLKI
CCCCCHHHHHCCCCCCCCEEEEEEEEEEEECCCCEECEEEEEEEC
>Mature Secondary Structure
MLLFEIEKPFNSPDYIFELKWDGYRALAFINDNNLLLQSRNQKNLTPYFSELKSITSLFK
CEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHC
GTNAVLDGEICYLNRDGKPVFEKLQGRIWQKKSNIKYPVTYITWDILGLNNNDLTRTPLL
CCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCHH
ERKKILQNYIQESNRLKRSKYIKEKGKELYEMAEEEGLEGIVAKKVNSPYEFKRSKYWYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCHHHHCCCEEEE
IKIWQYTTAVIVGFTRDKEALLVGKYLKDNNKISFMGRVKIALNEAEKKALFRFLPTLKV
EEEEEEEEEEEEEECCCCCEEEEEHHHCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCEE
KKPPFKVRHKQGISWVKPAIQCKVKYTEITSNNTFRHGFVVKLKI
CCCCCHHHHHCCCCCCCCEEEEEEEEEEEECCCCEECEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]