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The map label for this gene is ykoU [H]

Identifier: 220931189

GI number: 220931189

Start: 354672

End: 355613

Strand: Reverse

Name: ykoU [H]

Synonym: Hore_03410

Alternate gene names: 220931189

Gene position: 355613-354672 (Counterclockwise)

Preceding gene: 220931190

Following gene: 220931185

Centisome position: 13.79

GC content: 38.85

Gene sequence:

>942_bases
TTGAAGCTTACCATCGGTAAACACGATGTTCAATTAACCAATCTTGATAAGGTCCTATGGCCTGAACTGGGTTATACTAA
AGGTGATTTGATTAATTACTATATAAATATGTATCCCTATCTTAAAGAATACCTCTTAAACCGCCCCCTGTCCATGAAAA
GTTACCCGGATGGAATTAACGGTAAATCATTTTATCAGAAAGACTGCCCCGATTATGCCCCCCACTGGCTATCCACTTAT
GGTATTTTCTCGGGCCATCGAAAGGATATAATAAACTGGGTTACTATAAACAAACTATCAGACCTTGTCTGGGTTGCTAA
CCGGGCCTCAATAGAACTACATACCTGGTTTTCAACTACCACTAACCTTGATAAACCTGATTTTGCTGTATTTGACCTGG
ATCCCGGATCTAAATCATCTATGAAAGATGTAGTTGATATCGCCCTGACCATTAAAAATATCCTGGATGAATTTAATGTC
AGGTCATTTGTGAAAACCTCTGGCAAGAGGGGACTTCATGTTTATATTCCTGTTAAAACAAGATACACTTATAAAGAAAT
AAGAAGCTTCCTGCAAAATGTAGCGGAAATGGTAATCAAATTAAAACCAGAACAGGCTACTGTAGAATGGAGAAAAAATA
AGAGGCAGGGTAAGGTTTATATAGATTACCGACAGAACGGTAAATCCAAAACCCTTCCTGCCCCTTATTCTTTAAGGCCC
ACCAGTAAGGCCACCGTCTCTACCCCTCTAAAATGGTCAGAAATAACCCCGGATCTCAATCCAGATAATTACAATATTAA
AAATATTGAAACTAGAATCAAACAGAAGGGTAACATCTGGGAAACCCTTTTAAAAATACGCCAGGAACTACCCGGTCTTT
TTCTTGGTCTTCTTCTTTTTCTTTCCTTCTCCCTCTTCGGTGGCCTCAACACTTTTCTTTAG

Upstream 100 bases:

>100_bases
ATGTAAAGTTAAGTATACTGAAATTACCAGTAACAATACTTTCCGGCATGGATTTGTGGTTAAACTTAAAATATAAAGGA
AATATGAAGGAGTATATCAA

Downstream 100 bases:

>100_bases
TTTTTCCATAAGGTCAACAATCTTCCTTTCTTCAGGAACAACATCCGGTGTTTCGACCTCTTTACCTTCAATTTTCTGTC
TAATTATGTTCATCAGTTCT

Product: DNA polymerase LigD polymerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKLTIGKHDVQLTNLDKVLWPELGYTKGDLINYYINMYPYLKEYLLNRPLSMKSYPDGINGKSFYQKDCPDYAPHWLSTY
GIFSGHRKDIINWVTINKLSDLVWVANRASIELHTWFSTTTNLDKPDFAVFDLDPGSKSSMKDVVDIALTIKNILDEFNV
RSFVKTSGKRGLHVYIPVKTRYTYKEIRSFLQNVAEMVIKLKPEQATVEWRKNKRQGKVYIDYRQNGKSKTLPAPYSLRP
TSKATVSTPLKWSEITPDLNPDNYNIKNIETRIKQKGNIWETLLKIRQELPGLFLGLLLFLSFSLFGGLNTFL

Sequences:

>Translated_313_residues
MKLTIGKHDVQLTNLDKVLWPELGYTKGDLINYYINMYPYLKEYLLNRPLSMKSYPDGINGKSFYQKDCPDYAPHWLSTY
GIFSGHRKDIINWVTINKLSDLVWVANRASIELHTWFSTTTNLDKPDFAVFDLDPGSKSSMKDVVDIALTIKNILDEFNV
RSFVKTSGKRGLHVYIPVKTRYTYKEIRSFLQNVAEMVIKLKPEQATVEWRKNKRQGKVYIDYRQNGKSKTLPAPYSLRP
TSKATVSTPLKWSEITPDLNPDNYNIKNIETRIKQKGNIWETLLKIRQELPGLFLGLLLFLSFSLFGGLNTFL
>Mature_313_residues
MKLTIGKHDVQLTNLDKVLWPELGYTKGDLINYYINMYPYLKEYLLNRPLSMKSYPDGINGKSFYQKDCPDYAPHWLSTY
GIFSGHRKDIINWVTINKLSDLVWVANRASIELHTWFSTTTNLDKPDFAVFDLDPGSKSSMKDVVDIALTIKNILDEFNV
RSFVKTSGKRGLHVYIPVKTRYTYKEIRSFLQNVAEMVIKLKPEQATVEWRKNKRQGKVYIDYRQNGKSKTLPAPYSLRP
TSKATVSTPLKWSEITPDLNPDNYNIKNIETRIKQKGNIWETLLKIRQELPGLFLGLLLFLSFSLFGGLNTFL

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 36247; Mature: 36247

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTIGKHDVQLTNLDKVLWPELGYTKGDLINYYINMYPYLKEYLLNRPLSMKSYPDGIN
CEEECCCCCEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GKSFYQKDCPDYAPHWLSTYGIFSGHRKDIINWVTINKLSDLVWVANRASIELHTWFSTT
CCCCHHHCCCCCCCHHHHHHHCCCCCHHHHHHEEEHHHHHHHHEEECCCEEEEEEEECCC
TNLDKPDFAVFDLDPGSKSSMKDVVDIALTIKNILDEFNVRSFVKTSGKRGLHVYIPVKT
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
RYTYKEIRSFLQNVAEMVIKLKPEQATVEWRKNKRQGKVYIDYRQNGKSKTLPAPYSLRP
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCC
TSKATVSTPLKWSEITPDLNPDNYNIKNIETRIKQKGNIWETLLKIRQELPGLFLGLLLF
CCCCEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
LSFSLFGGLNTFL
HHHHHHCCHHHCC
>Mature Secondary Structure
MKLTIGKHDVQLTNLDKVLWPELGYTKGDLINYYINMYPYLKEYLLNRPLSMKSYPDGIN
CEEECCCCCEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GKSFYQKDCPDYAPHWLSTYGIFSGHRKDIINWVTINKLSDLVWVANRASIELHTWFSTT
CCCCHHHCCCCCCCHHHHHHHCCCCCHHHHHHEEEHHHHHHHHEEECCCEEEEEEEECCC
TNLDKPDFAVFDLDPGSKSSMKDVVDIALTIKNILDEFNVRSFVKTSGKRGLHVYIPVKT
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
RYTYKEIRSFLQNVAEMVIKLKPEQATVEWRKNKRQGKVYIDYRQNGKSKTLPAPYSLRP
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCC
TSKATVSTPLKWSEITPDLNPDNYNIKNIETRIKQKGNIWETLLKIRQELPGLFLGLLLF
CCCCEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
LSFSLFGGLNTFL
HHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]