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The map label for this gene is ypdB [C]

Identifier: 220931013

GI number: 220931013

Start: 170592

End: 171308

Strand: Direct

Name: ypdB [C]

Synonym: Hore_01640

Alternate gene names: 220931013

Gene position: 170592-171308 (Clockwise)

Preceding gene: 220931012

Following gene: 220931014

Centisome position: 6.62

GC content: 33.47

Gene sequence:

>717_bases
ATGACACCTGAAATTATTATCTGTGATGATGACCCTCAAATGGTTGACCTTCTGGTGAATTTCTGCGAGAGTAAACTTAA
GTTACATATTCTGGATAAAGCAACTAAAGGTCAGGCGGTTATTGATATGGTAAAAAAAAGTAACCCGGATATCCTGTTAC
TGGATATAAATTTACCTGATATGGATGGCATCCAGGTAGCCCGTCAAATCAGGGAGTTTAATCCCTTTGTTAAAATAATA
TTTATTACTGGTCATGAAAATTATTACCGGGATGCTTTTGATGTTTATGCATATGACTACATAAGTAAAGATTCTTTAAC
TACCAGGTTACCCCAATCTGTTAAGAGAATTAAAGAAGAAATGAAGTTAAACAGGATAAAGGAAAATGGAAGTAACTGGC
ACCAGATAACTGTAAATAAAAAACAACATTATATCAATGAAGATGATATAATCTATATTAAAAGTGAGGGCCGGAAACTT
GTTATAGTAACCTATGAAGAAGAATATGTTACCTATGGAAACCTTAAAGACTGGGGGCTTAAACTTGGTTCGACTTTTTT
TAAATGCCATCGTTCATATTTAATAAATTTAAATAAGATTAAAGAAATAAGGGGTGGTATTCCAGAGACAGTTGTTATTA
TGGGTAATCGTCAAAAAATACCGGTAAGTAGATTCAGGGTAAGTGAATTAAAGAGGGTCCTGAATATGGCTGGTTAA

Upstream 100 bases:

>100_bases
TAAAGTGATAGCTTGACCTCATACATATTCTGATATAATAAGGGTAGAGTAGATATTTCATAATTTTATGTGTGAAAATA
ATTGACCAGGAGGGTTATAT

Downstream 100 bases:

>100_bases
AAATAATTATATTTTACTCTTCTTTATATATTTACTTAGATGATTAATAAGAACATGTCCCTGTGGTTATAATAATGTTA
AGTTAATATTATAACCAGGA

Product: two component transcriptional regulator, LytTR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTPEIIICDDDPQMVDLLVNFCESKLKLHILDKATKGQAVIDMVKKSNPDILLLDINLPDMDGIQVARQIREFNPFVKII
FITGHENYYRDAFDVYAYDYISKDSLTTRLPQSVKRIKEEMKLNRIKENGSNWHQITVNKKQHYINEDDIIYIKSEGRKL
VIVTYEEEYVTYGNLKDWGLKLGSTFFKCHRSYLINLNKIKEIRGGIPETVVIMGNRQKIPVSRFRVSELKRVLNMAG

Sequences:

>Translated_238_residues
MTPEIIICDDDPQMVDLLVNFCESKLKLHILDKATKGQAVIDMVKKSNPDILLLDINLPDMDGIQVARQIREFNPFVKII
FITGHENYYRDAFDVYAYDYISKDSLTTRLPQSVKRIKEEMKLNRIKENGSNWHQITVNKKQHYINEDDIIYIKSEGRKL
VIVTYEEEYVTYGNLKDWGLKLGSTFFKCHRSYLINLNKIKEIRGGIPETVVIMGNRQKIPVSRFRVSELKRVLNMAG
>Mature_237_residues
TPEIIICDDDPQMVDLLVNFCESKLKLHILDKATKGQAVIDMVKKSNPDILLLDINLPDMDGIQVARQIREFNPFVKIIF
ITGHENYYRDAFDVYAYDYISKDSLTTRLPQSVKRIKEEMKLNRIKENGSNWHQITVNKKQHYINEDDIIYIKSEGRKLV
IVTYEEEYVTYGNLKDWGLKLGSTFFKCHRSYLINLNKIKEIRGGIPETVVIMGNRQKIPVSRFRVSELKRVLNMAG

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=248, Percent_Identity=27.4193548387097, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082052, Length=241, Percent_Identity=27.3858921161826, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27746; Mature: 27614

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPEIIICDDDPQMVDLLVNFCESKLKLHILDKATKGQAVIDMVKKSNPDILLLDINLPD
CCCCEEEECCCHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCC
MDGIQVARQIREFNPFVKIIFITGHENYYRDAFDVYAYDYISKDSLTTRLPQSVKRIKEE
CCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
MKLNRIKENGSNWHQITVNKKQHYINEDDIIYIKSEGRKLVIVTYEEEYVTYGNLKDWGL
HHHHHHHCCCCCEEEEEEECHHHCCCCCCEEEEECCCCEEEEEEEECCEEEECCCHHHHH
KLGSTFFKCHRSYLINLNKIKEIRGGIPETVVIMGNRQKIPVSRFRVSELKRVLNMAG
HHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPEIIICDDDPQMVDLLVNFCESKLKLHILDKATKGQAVIDMVKKSNPDILLLDINLPD
CCCEEEECCCHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCC
MDGIQVARQIREFNPFVKIIFITGHENYYRDAFDVYAYDYISKDSLTTRLPQSVKRIKEE
CCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
MKLNRIKENGSNWHQITVNKKQHYINEDDIIYIKSEGRKLVIVTYEEEYVTYGNLKDWGL
HHHHHHHCCCCCEEEEEEECHHHCCCCCCEEEEECCCCEEEEEEEECCEEEECCCHHHHH
KLGSTFFKCHRSYLINLNKIKEIRGGIPETVVIMGNRQKIPVSRFRVSELKRVLNMAG
HHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]