Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 220930984

GI number: 220930984

Start: 145240

End: 146508

Strand: Direct

Name: secY [H]

Synonym: Hore_01360

Alternate gene names: 220930984

Gene position: 145240-146508 (Clockwise)

Preceding gene: 220930983

Following gene: 220930985

Centisome position: 5.63

GC content: 40.82

Gene sequence:

>1269_bases
TTGATATCTGCTTTAAAGAATGCCTTTAAAGTGAAGGAAATCAGGAAGAAGATTTTATTTGTGCTGGGGATGATGGTTGT
CTACCGGATCGGGGCTCATATTCCAGTACCCGGTATTGATGTTGTTAAATTACGTGAGATCCTATTTCAGGGGACAGCTC
AGGGGGTATTTGATTACCTGGACCTCTTTGCCGGGGGAGCTTTGAGGAATTTTACCATTTTTGCCATGAGTATTACCCCC
TATATTACTGCTTCAATTATTTTGCAGTTATTAACCGGAGTTATCCCCAGACTGGAGGAATTACAGAAACAGGGTGTTGA
AGGACGTAAAAAGTTAACCCAGTATACCCGCTACGGAACTGTAGTCCTGGCTATTATTCAGGCCTTTGGTATTACCATGT
TAATAGGAAGACATAATGTTATTGTAAATCCTAATCTATTCAATCTTATGTTAATTGTAATCAGTTTGACTGCGGGTACA
GCTTTTTTAATGTGGCTTGGGGAACAGATCACCGACAAAGGTATTGGTAACGGAATATCAATCATTATATTCACTTCAAT
TATTTCCAGATTCCCATCCTATATACATCGCAACTGGGAATTATATAAAACTGGAGATATAACAGCACTAAATATACTAT
TCTTCCTGGTTTTAGCCGTTGTAATTATCGCCGGGGTTATCTTTATTCAGCAGGGTGAGAGGAGAATTCCTGTTCAGTAT
TCAAAAAGAGTTGTTGGCCGTAAGGTATACGGGGGTAGAAGTACCCATATTCCGATGCGGATTAACCAGGCAGGGGTTAT
TCCGGTAATATTTGCCCAGGCTGTATTACAGTTCCCGACAGTTATTGCTGCCGTGCTTCCATACGGTTGGGCTCAGGATA
TAGCAACAGCCCTTGAACCGGGCAAACCAGTACATTTAGTCCTGTATGCAGCTATGATTTTCTTCTTTACCTATTTCTGG
ACTGCATTTACCTTTAATCCTGAAGAAGTAGCCGATAATATGAGGAAGTCAGGTGCCTTTATTCCTGGTATTAGACCGGG
TAAGGCTACTGAAAACTTCCTGACCAGGATTCTGGTAAGGGTTACCCTTGCCGGTGCTATTTTCCTGACTGTAATTGCTA
TTATGCCCTATTTTATCAGTGATATTACCAGGGTTAGAATTAGTTTTGGTGGAACTTCCCTCTTAATTATGACCGGTGTT
GCCTTACAGACAATGCAGCAGATTGAATCCCAGTTATTGATGAGGCACTATGAAGGATTTATGAAATAA

Upstream 100 bases:

>100_bases
TGGTGAGCTTGATAAGGCTTTAACTGTTAAGGCTCATGCTTTTACTAAAAGTGCCAGAGAGAAAATTGAAGCTGCCGGTG
GGAAGGCTGAGGTGATTTAA

Downstream 100 bases:

>100_bases
AAAAGGGGGTTTTTGGATGAATATTGTATTATTGGGTCTACCAGGGGCAGGTAAAGGAACCCAGGCCAAGAAAATGAGTC
AGGAATACAACCTGCCCCAT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MISALKNAFKVKEIRKKILFVLGMMVVYRIGAHIPVPGIDVVKLREILFQGTAQGVFDYLDLFAGGALRNFTIFAMSITP
YITASIILQLLTGVIPRLEELQKQGVEGRKKLTQYTRYGTVVLAIIQAFGITMLIGRHNVIVNPNLFNLMLIVISLTAGT
AFLMWLGEQITDKGIGNGISIIIFTSIISRFPSYIHRNWELYKTGDITALNILFFLVLAVVIIAGVIFIQQGERRIPVQY
SKRVVGRKVYGGRSTHIPMRINQAGVIPVIFAQAVLQFPTVIAAVLPYGWAQDIATALEPGKPVHLVLYAAMIFFFTYFW
TAFTFNPEEVADNMRKSGAFIPGIRPGKATENFLTRILVRVTLAGAIFLTVIAIMPYFISDITRVRISFGGTSLLIMTGV
ALQTMQQIESQLLMRHYEGFMK

Sequences:

>Translated_422_residues
MISALKNAFKVKEIRKKILFVLGMMVVYRIGAHIPVPGIDVVKLREILFQGTAQGVFDYLDLFAGGALRNFTIFAMSITP
YITASIILQLLTGVIPRLEELQKQGVEGRKKLTQYTRYGTVVLAIIQAFGITMLIGRHNVIVNPNLFNLMLIVISLTAGT
AFLMWLGEQITDKGIGNGISIIIFTSIISRFPSYIHRNWELYKTGDITALNILFFLVLAVVIIAGVIFIQQGERRIPVQY
SKRVVGRKVYGGRSTHIPMRINQAGVIPVIFAQAVLQFPTVIAAVLPYGWAQDIATALEPGKPVHLVLYAAMIFFFTYFW
TAFTFNPEEVADNMRKSGAFIPGIRPGKATENFLTRILVRVTLAGAIFLTVIAIMPYFISDITRVRISFGGTSLLIMTGV
ALQTMQQIESQLLMRHYEGFMK
>Mature_422_residues
MISALKNAFKVKEIRKKILFVLGMMVVYRIGAHIPVPGIDVVKLREILFQGTAQGVFDYLDLFAGGALRNFTIFAMSITP
YITASIILQLLTGVIPRLEELQKQGVEGRKKLTQYTRYGTVVLAIIQAFGITMLIGRHNVIVNPNLFNLMLIVISLTAGT
AFLMWLGEQITDKGIGNGISIIIFTSIISRFPSYIHRNWELYKTGDITALNILFFLVLAVVIIAGVIFIQQGERRIPVQY
SKRVVGRKVYGGRSTHIPMRINQAGVIPVIFAQAVLQFPTVIAAVLPYGWAQDIATALEPGKPVHLVLYAAMIFFFTYFW
TAFTFNPEEVADNMRKSGAFIPGIRPGKATENFLTRILVRVTLAGAIFLTVIAIMPYFISDITRVRISFGGTSLLIMTGV
ALQTMQQIESQLLMRHYEGFMK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=418, Percent_Identity=45.6937799043062, Blast_Score=351, Evalue=4e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47075; Mature: 47075

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISALKNAFKVKEIRKKILFVLGMMVVYRIGAHIPVPGIDVVKLREILFQGTAQGVFDYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
DLFAGGALRNFTIFAMSITPYITASIILQLLTGVIPRLEELQKQGVEGRKKLTQYTRYGT
HHHCCCCHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VVLAIIQAFGITMLIGRHNVIVNPNLFNLMLIVISLTAGTAFLMWLGEQITDKGIGNGIS
HHHHHHHHHHHHEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
IIIFTSIISRFPSYIHRNWELYKTGDITALNILFFLVLAVVIIAGVIFIQQGERRIPVQY
HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
SKRVVGRKVYGGRSTHIPMRINQAGVIPVIFAQAVLQFPTVIAAVLPYGWAQDIATALEP
HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
GKPVHLVLYAAMIFFFTYFWTAFTFNPEEVADNMRKSGAFIPGIRPGKATENFLTRILVR
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
VTLAGAIFLTVIAIMPYFISDITRVRISFGGTSLLIMTGVALQTMQQIESQLLMRHYEGF
HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MK
CC
>Mature Secondary Structure
MISALKNAFKVKEIRKKILFVLGMMVVYRIGAHIPVPGIDVVKLREILFQGTAQGVFDYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
DLFAGGALRNFTIFAMSITPYITASIILQLLTGVIPRLEELQKQGVEGRKKLTQYTRYGT
HHHCCCCHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VVLAIIQAFGITMLIGRHNVIVNPNLFNLMLIVISLTAGTAFLMWLGEQITDKGIGNGIS
HHHHHHHHHHHHEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
IIIFTSIISRFPSYIHRNWELYKTGDITALNILFFLVLAVVIIAGVIFIQQGERRIPVQY
HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
SKRVVGRKVYGGRSTHIPMRINQAGVIPVIFAQAVLQFPTVIAAVLPYGWAQDIATALEP
HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
GKPVHLVLYAAMIFFFTYFWTAFTFNPEEVADNMRKSGAFIPGIRPGKATENFLTRILVR
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
VTLAGAIFLTVIAIMPYFISDITRVRISFGGTSLLIMTGVALQTMQQIESQLLMRHYEGF
HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA