Click here to switch to the map view.

The map label for this gene is mrnC [H]

Identifier: 220930945

GI number: 220930945

Start: 116529

End: 116915

Strand: Direct

Name: mrnC [H]

Synonym: Hore_00970

Alternate gene names: 220930945

Gene position: 116529-116915 (Clockwise)

Preceding gene: 220930944

Following gene: 220930946

Centisome position: 4.52

GC content: 40.57

Gene sequence:

>387_bases
ATGACCAATAAAGTTAATCTTATGTCTCCAGGCCACCTGGCCTATGTTGGTGATAGTGTTTATGAATTACTGGTCAGAAA
TTATCTGGTAAACCAGGGTATTTATCCCCTGAATAAAGTTCATAAAAATGCGGTTAGGCTGGTTAATGCTGCTGCCCAGG
CCCGGGGTTTGAGGGCTATTGAAGATAAATTAGAAGATAAAGAAAAGGCTATTGTCAGGAGAGGACGGAACTTTAATAGT
GGAAGCAGTCCCAGAAATATGAAGATTGCTGATTACAGACTCAGCACAGGGCTCGAGGCCCTTTTTGGTTACCTTTATTT
AAACGGTAATTATGACCGTATAAAAGAGTTATGGTCACTTCTTATAAAGGAACTGGAGGGAGAGTAA

Upstream 100 bases:

>100_bases
AACTGGCAGCTGGCTGATAGAATTCGTGATGGGCTTGAAGACCTTGGTTTTGAAATAAAAGATACCCCCCATGGGGTCAG
GTGGGAAAGGAAGTAAAATT

Downstream 100 bases:

>100_bases
TAATGGAAGTAAGACCTGAAGCAAAATTAATTGATTATACCCCCGATCCGGAAAAAAATGTCGCTATTTCGGCCAGATTG
TGTTATTCAAAAAAAGGACC

Product: ribonuclease III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MTNKVNLMSPGHLAYVGDSVYELLVRNYLVNQGIYPLNKVHKNAVRLVNAAAQARGLRAIEDKLEDKEKAIVRRGRNFNS
GSSPRNMKIADYRLSTGLEALFGYLYLNGNYDRIKELWSLLIKELEGE

Sequences:

>Translated_128_residues
MTNKVNLMSPGHLAYVGDSVYELLVRNYLVNQGIYPLNKVHKNAVRLVNAAAQARGLRAIEDKLEDKEKAIVRRGRNFNS
GSSPRNMKIADYRLSTGLEALFGYLYLNGNYDRIKELWSLLIKELEGE
>Mature_127_residues
TNKVNLMSPGHLAYVGDSVYELLVRNYLVNQGIYPLNKVHKNAVRLVNAAAQARGLRAIEDKLEDKEKAIVRRGRNFNSG
SSPRNMKIADYRLSTGLEALFGYLYLNGNYDRIKELWSLLIKELEGE

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 14543; Mature: 14412

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKVNLMSPGHLAYVGDSVYELLVRNYLVNQGIYPLNKVHKNAVRLVNAAAQARGLRAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
EDKLEDKEKAIVRRGRNFNSGSSPRNMKIADYRLSTGLEALFGYLYLNGNYDRIKELWSL
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LIKELEGE
HHHHHCCC
>Mature Secondary Structure 
TNKVNLMSPGHLAYVGDSVYELLVRNYLVNQGIYPLNKVHKNAVRLVNAAAQARGLRAI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
EDKLEDKEKAIVRRGRNFNSGSSPRNMKIADYRLSTGLEALFGYLYLNGNYDRIKELWSL
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LIKELEGE
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]