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The map label for this gene is rbsB [H]

Identifier: 220930859

GI number: 220930859

Start: 10003

End: 10833

Strand: Reverse

Name: rbsB [H]

Synonym: Hore_00090

Alternate gene names: 220930859

Gene position: 10833-10003 (Counterclockwise)

Preceding gene: 220930863

Following gene: 220930858

Centisome position: 0.42

GC content: 35.14

Gene sequence:

>831_bases
ATGGATTTTTTAAAGTCAGTCGTATTATCTTCAGTCGTATTATCTAATGTATTATTTATTAAAAAATTTATTAAAATATT
ATATACTCATTATCAAAAAGTTAACAGAAAAATAATTTATATATCATTAATAATAGGTATAATATCGTTAATGGTTATAC
CCCTGTCCGGTTGTTCCCCTGCTTCCGGGGAGTCTAAGAAGCCAGAGAAAGTAAAAATCGGGGTCACGGTAGCCACCATG
AAATATGATGTATTTTATTTAATCAAAGAAGCCATGTTTGATAATCAGGAAAGGGAGAATGCAACTCTGATCTGGAAAGA
TGCCGGTTATGATGAAAAAAGGCAGGCTCAACATATTGATGAATTTATCAAGGAAAAGGTAGATGTGGTTATAATTCATC
CGGTAAACCCCATAACTTCAGGTAAATTAGTTAAAAAATTATCAAGTAAAAAAATCCCGGTACTGGCCTTAAGGAGATTA
CCTTATGAAGTCGGTCTAGATGGTTATATTCCGGCCAATAATTTCAGAATAGGTATGGAGCAGGCTATCTATGTTGCTGA
CCAGATAGACCATGAAGGGAAAGTTGTTATTTTAAAGGGGGATAAAAAAACCAATTCAGCCCAGTTAATAACCTGGGGAA
ATAAACAGATTTTAAAAAAAGAACCCGGTATCAAAATTGTGGCAGAAAAGTGGCATGAATTTGACAAAGTTGAAGAGGCA
GCTAAAACCACCAGGCAAGCTTTAGAAAAATACCCCGATATTAAAGCCATACTGGCAAATAACAGCCGCCTGGCCATGCA
GGCCGTCAAGGTTTTAAAAGAAAAAAACTGA

Upstream 100 bases:

>100_bases
CTATAATAAGATTAAAAACCTGGTATTAAATTATACCATGTAACAGGATATACCATCACCAGCTTAATCACCACCAGGTT
ACAGAGGGAGGAGGGTCTAA

Downstream 100 bases:

>100_bases
CCGACAAAGTTGTTACCATCGGGTCAGATTTAAGTAAAGAAGCCTATGAAGCCATTAAAAAGGGAGACCATGATGCCGAG
ATCGATACTATGCCCTATCT

Product: sugar ABC transporter periplasmic protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDFLKSVVLSSVVLSNVLFIKKFIKILYTHYQKVNRKIIYISLIIGIISLMVIPLSGCSPASGESKKPEKVKIGVTVATM
KYDVFYLIKEAMFDNQERENATLIWKDAGYDEKRQAQHIDEFIKEKVDVVIIHPVNPITSGKLVKKLSSKKIPVLALRRL
PYEVGLDGYIPANNFRIGMEQAIYVADQIDHEGKVVILKGDKKTNSAQLITWGNKQILKKEPGIKIVAEKWHEFDKVEEA
AKTTRQALEKYPDIKAILANNSRLAMQAVKVLKEKN

Sequences:

>Translated_276_residues
MDFLKSVVLSSVVLSNVLFIKKFIKILYTHYQKVNRKIIYISLIIGIISLMVIPLSGCSPASGESKKPEKVKIGVTVATM
KYDVFYLIKEAMFDNQERENATLIWKDAGYDEKRQAQHIDEFIKEKVDVVIIHPVNPITSGKLVKKLSSKKIPVLALRRL
PYEVGLDGYIPANNFRIGMEQAIYVADQIDHEGKVVILKGDKKTNSAQLITWGNKQILKKEPGIKIVAEKWHEFDKVEEA
AKTTRQALEKYPDIKAILANNSRLAMQAVKVLKEKN
>Mature_276_residues
MDFLKSVVLSSVVLSNVLFIKKFIKILYTHYQKVNRKIIYISLIIGIISLMVIPLSGCSPASGESKKPEKVKIGVTVATM
KYDVFYLIKEAMFDNQERENATLIWKDAGYDEKRQAQHIDEFIKEKVDVVIIHPVNPITSGKLVKKLSSKKIPVLALRRL
PYEVGLDGYIPANNFRIGMEQAIYVADQIDHEGKVVILKGDKKTNSAQLITWGNKQILKKEPGIKIVAEKWHEFDKVEEA
AKTTRQALEKYPDIKAILANNSRLAMQAVKVLKEKN

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=207, Percent_Identity=28.0193236714976, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 31293; Mature: 31293

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLKSVVLSSVVLSNVLFIKKFIKILYTHYQKVNRKIIYISLIIGIISLMVIPLSGCSP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHCCCCCCC
ASGESKKPEKVKIGVTVATMKYDVFYLIKEAMFDNQERENATLIWKDAGYDEKRQAQHID
CCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
EFIKEKVDVVIIHPVNPITSGKLVKKLSSKKIPVLALRRLPYEVGLDGYIPANNFRIGME
HHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCEEECHH
QAIYVADQIDHEGKVVILKGDKKTNSAQLITWGNKQILKKEPGIKIVAEKWHEFDKVEEA
HHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCHHHHCCCCCEEHHHHHHHHHHHHHH
AKTTRQALEKYPDIKAILANNSRLAMQAVKVLKEKN
HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFLKSVVLSSVVLSNVLFIKKFIKILYTHYQKVNRKIIYISLIIGIISLMVIPLSGCSP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHCCCCCCC
ASGESKKPEKVKIGVTVATMKYDVFYLIKEAMFDNQERENATLIWKDAGYDEKRQAQHID
CCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
EFIKEKVDVVIIHPVNPITSGKLVKKLSSKKIPVLALRRLPYEVGLDGYIPANNFRIGME
HHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCEEECHH
QAIYVADQIDHEGKVVILKGDKKTNSAQLITWGNKQILKKEPGIKIVAEKWHEFDKVEEA
HHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCHHHHCCCCCEEHHHHHHHHHHHHHH
AKTTRQALEKYPDIKAILANNSRLAMQAVKVLKEKN
HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]