Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 220919586

GI number: 220919586

Start: 5022268

End: 5022705

Strand: Direct

Name: (hspc4-1 [H]

Synonym: A2cp1_4507

Alternate gene names: 220919586

Gene position: 5022268-5022705 (Clockwise)

Preceding gene: 220919570

Following gene: NA

Centisome position: 99.86

GC content: 68.49

Gene sequence:

>438_bases
ATGGCGATGCTGACCAGATTCGAGCCCTTCCGAGACCTGGCGAGGCTGCAGGACGAGATGGGCCGCATGTTCGGTGATGA
CCGCCTGTTCCGCGCCGGCGAGTCGGTGGGCTGGACGCCCGCGTGCGACATCTACGAGGACGAGGAGGCAGTGGCGCTCC
GCTTCGAGCTGGCTGGGGTGGATCCGAAGGACGTCGAGGTCCGCTTCGAGAACGGCGTGCTGACGCTGCGGGGCGAGCGG
AAGCTCGAGCACGAGGAGAAGCGCGAGAACTACCACCGCGTCGAGCTCGGCTACGGCACCTTCACCCGCTCCTTCACGCT
CCCGAGCACCGTGGACGCGGAGCACATCCGCGCCGAGGCGAGGAACGGGGTGCTGGCGGTGACGCTGCCGAAGCGCGCCG
AGGCGAAGCCGCGCGCGATCCAGGTGAAGATCACCTGA

Upstream 100 bases:

>100_bases
TCCCGGCTTTACCCCGTGGACTTTCGCGGGGTTCGGGCCTCGATTGACACCCGCACCCGTCGACTTACGTTCCCCGCGCC
TGAAAAGGAGGTCAAAAATC

Downstream 100 bases:

>100_bases
GCGATCTCACGGGGCTGGGGGTTCTCCGCGAGGGCTGCGCCCTCGCCCCGCCGGCGAGCCGTCGGGGCCCCACTCCTGCT
GCGCGGGGCCCGTGACCTCG

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAMLTRFEPFRDLARLQDEMGRMFGDDRLFRAGESVGWTPACDIYEDEEAVALRFELAGVDPKDVEVRFENGVLTLRGER
KLEHEEKRENYHRVELGYGTFTRSFTLPSTVDAEHIRAEARNGVLAVTLPKRAEAKPRAIQVKIT

Sequences:

>Translated_145_residues
MAMLTRFEPFRDLARLQDEMGRMFGDDRLFRAGESVGWTPACDIYEDEEAVALRFELAGVDPKDVEVRFENGVLTLRGER
KLEHEEKRENYHRVELGYGTFTRSFTLPSTVDAEHIRAEARNGVLAVTLPKRAEAKPRAIQVKIT
>Mature_144_residues
AMLTRFEPFRDLARLQDEMGRMFGDDRLFRAGESVGWTPACDIYEDEEAVALRFELAGVDPKDVEVRFENGVLTLRGERK
LEHEEKRENYHRVELGYGTFTRSFTLPSTVDAEHIRAEARNGVLAVTLPKRAEAKPRAIQVKIT

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16627; Mature: 16496

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMLTRFEPFRDLARLQDEMGRMFGDDRLFRAGESVGWTPACDIYEDEEAVALRFELAGV
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEECCCEEEEEEEECCC
DPKDVEVRFENGVLTLRGERKLEHEEKRENYHRVELGYGTFTRSFTLPSTVDAEHIRAEA
CCCCEEEEECCCEEEEECCCCCCHHHHHCCCEEEEECCCCEEEEEECCCCCCHHHHHHHH
RNGVLAVTLPKRAEAKPRAIQVKIT
CCCEEEEEECCCCCCCCCEEEEEEC
>Mature Secondary Structure 
AMLTRFEPFRDLARLQDEMGRMFGDDRLFRAGESVGWTPACDIYEDEEAVALRFELAGV
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEECCCEEEEEEEECCC
DPKDVEVRFENGVLTLRGERKLEHEEKRENYHRVELGYGTFTRSFTLPSTVDAEHIRAEA
CCCCEEEEECCCEEEEECCCCCCHHHHHCCCEEEEECCCCEEEEEECCCCCCHHHHHHHH
RNGVLAVTLPKRAEAKPRAIQVKIT
CCCEEEEEECCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA