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The map label for this gene is treC [C]

Identifier: 220919359

GI number: 220919359

Start: 4769995

End: 4771620

Strand: Direct

Name: treC [C]

Synonym: A2cp1_4280

Alternate gene names: 220919359

Gene position: 4769995-4771620 (Clockwise)

Preceding gene: 220919357

Following gene: 220919360

Centisome position: 94.84

GC content: 74.29

Gene sequence:

>1626_bases
ATGACCCCGTCCCGCCGCCCCGCCGCGCTCCTCGCCGCCGCCCTCGCCGCGCTCGCGTGCGCGCACGCGCCCGCCGGATC
CTCCGGCGCCGGCCCGGCCCGGGCCACCGGCGCGCCGGCCGCGCCGTGGTGGAAGGGCGCGGTCTTCTACGAGGTGTTCG
TGCGCAGCTTCGCGGACTCCGACGGCGACGGGAAGGGCGATCTCCGCGGCCTCACCGCGAAGCTCGACTACCTGAACGAC
GGCGATCCGGCCACCGCCACCGACCTCGGCGTGGACGCGATCTGGCTCATGCCGGTGTTCGCCTCGCCCAGCTACCACGG
CTACGACGTCACCGATTACCTGAAGGTCAACCCCGACTACGGCACCGAGGCCGACCTCGACCGGCTCATCGCGGAGGCGC
ACCGGCGCGGCGTCCGCGTGGTCCTCGACCTCGTCCTCAACCACACCTCCGACCAGCACCCGTGGTTCCGCGAGTCGGCC
TCCTCGCGCACCTCGCCGCGCCGCGACTGGTACGTGTGGCGCGCGGACGATCCGGGCTGGACGCAGCCGTGGAACCCGTC
GCAGGCCGCCTGGTACCGCCGCGGCGGCGAGTGGTACTACGCGATCTTCTGGAGCGGGATGCCGGACCTGAACTACCGGA
ACCCGGCCGTGCGCGAGGAGGCGAAGCGGATCGCGGCGCACTGGCTGGGGAAGGGCGTGGACGGGTTCCGCCTCGACGCC
ATCCGCCACCTCGTCGAGACCGGCCCGGGGGCGGGCCAGTCCGGCTCGCAGGAGAACCACGTCTTCCTGCGCGAGCTCGC
GGCGGCGGTCCGTGCCGGAAAGCCGGACGCGGTCCTGGTGGGCGAGGTCTGGTCGGAGACCGACGACATCGCGCGGTACT
ACGGGGACGGGAAGGACGAGCTGCAGCTCCTGTTCGACTTCCCGCTCGCGAAGGCGATCGTGGAGGGGGTGGACGCGGGC
GACGGCGGCTTCACCGCGCACGTGCTCCGCGAGGTCGCCGCGGCGTATCCGCCCGGCGCGGTGGACGCGCCGTTCCTCAC
CAACCACGACCAGTTCCGGGTCGCGACGCAGCTCGCGAACGACGCCGGGAAGCTGCGGCTCGCGGCGGCGATCCTGCTCA
CGCTCCCCGGCGCGCCGTTCGTCTACTACGGCGAGGAGCTGGGGATGCAGAACGGCCCCGGCCGCGAGGACGAGTGGAAG
CGGACGCCCATGCCCTGGGACCGCTCGGAGCAGGGCGGGTTCACCCGGGGTGACCCGTGGATGCCGCTCGGGCCGGGGCA
CGAGAGCGCGAACGTGGCGGTCGAGTCGAGCGATCCGGGGTCGCTGCTGTCGAGGTACCGGGCGCTCGTGCGCGCGCGGA
AGGGGTCCGCGGCGCTCGCGCGCGGGGATGCGGTGCCGCTGTCGACGCCGGGTTCGGCGCTCGCGTACGTGCGGCGGGTC
GAGGGGGAGACGGTGCTGGTGGTGCACAACATGGGGGCGGGGCCGCTCGAGATCGGGGGGCTGGAGGCGCCGGGTGCGGT
TGCGGAGGCGGTGTTCGTGGATCCTGGCGCGGCGCTGGTGCGGGACGGGACGGGGTGGCGGGTCGTGCTGCCGCCGCGGG
CCTCCGGGGTTTGGAGGGTGAGGTAG

Upstream 100 bases:

>100_bases
CGTCCCTCCCGCACGCCTGCGCCCTTTTCGACCGCAGGTGACCGCCGCGCGGCGCGCTAGAGTCGCGGCTCCGGCGCCCT
GGCGCGCCCCCGGAGGCCGC

Downstream 100 bases:

>100_bases
GGGGGCTTTGAAGGGCGCGGCGGGGGTGCGTGGCCGGAATGGGTTCGGAAGCGGAGCTGGAGGTCGGGCAGCGGGCTTGC
GGGACGGGCCTCGCTGGCCG

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 541; Mature: 540

Protein sequence:

>541_residues
MTPSRRPAALLAAALAALACAHAPAGSSGAGPARATGAPAAPWWKGAVFYEVFVRSFADSDGDGKGDLRGLTAKLDYLND
GDPATATDLGVDAIWLMPVFASPSYHGYDVTDYLKVNPDYGTEADLDRLIAEAHRRGVRVVLDLVLNHTSDQHPWFRESA
SSRTSPRRDWYVWRADDPGWTQPWNPSQAAWYRRGGEWYYAIFWSGMPDLNYRNPAVREEAKRIAAHWLGKGVDGFRLDA
IRHLVETGPGAGQSGSQENHVFLRELAAAVRAGKPDAVLVGEVWSETDDIARYYGDGKDELQLLFDFPLAKAIVEGVDAG
DGGFTAHVLREVAAAYPPGAVDAPFLTNHDQFRVATQLANDAGKLRLAAAILLTLPGAPFVYYGEELGMQNGPGREDEWK
RTPMPWDRSEQGGFTRGDPWMPLGPGHESANVAVESSDPGSLLSRYRALVRARKGSAALARGDAVPLSTPGSALAYVRRV
EGETVLVVHNMGAGPLEIGGLEAPGAVAEAVFVDPGAALVRDGTGWRVVLPPRASGVWRVR

Sequences:

>Translated_541_residues
MTPSRRPAALLAAALAALACAHAPAGSSGAGPARATGAPAAPWWKGAVFYEVFVRSFADSDGDGKGDLRGLTAKLDYLND
GDPATATDLGVDAIWLMPVFASPSYHGYDVTDYLKVNPDYGTEADLDRLIAEAHRRGVRVVLDLVLNHTSDQHPWFRESA
SSRTSPRRDWYVWRADDPGWTQPWNPSQAAWYRRGGEWYYAIFWSGMPDLNYRNPAVREEAKRIAAHWLGKGVDGFRLDA
IRHLVETGPGAGQSGSQENHVFLRELAAAVRAGKPDAVLVGEVWSETDDIARYYGDGKDELQLLFDFPLAKAIVEGVDAG
DGGFTAHVLREVAAAYPPGAVDAPFLTNHDQFRVATQLANDAGKLRLAAAILLTLPGAPFVYYGEELGMQNGPGREDEWK
RTPMPWDRSEQGGFTRGDPWMPLGPGHESANVAVESSDPGSLLSRYRALVRARKGSAALARGDAVPLSTPGSALAYVRRV
EGETVLVVHNMGAGPLEIGGLEAPGAVAEAVFVDPGAALVRDGTGWRVVLPPRASGVWRVR
>Mature_540_residues
TPSRRPAALLAAALAALACAHAPAGSSGAGPARATGAPAAPWWKGAVFYEVFVRSFADSDGDGKGDLRGLTAKLDYLNDG
DPATATDLGVDAIWLMPVFASPSYHGYDVTDYLKVNPDYGTEADLDRLIAEAHRRGVRVVLDLVLNHTSDQHPWFRESAS
SRTSPRRDWYVWRADDPGWTQPWNPSQAAWYRRGGEWYYAIFWSGMPDLNYRNPAVREEAKRIAAHWLGKGVDGFRLDAI
RHLVETGPGAGQSGSQENHVFLRELAAAVRAGKPDAVLVGEVWSETDDIARYYGDGKDELQLLFDFPLAKAIVEGVDAGD
GGFTAHVLREVAAAYPPGAVDAPFLTNHDQFRVATQLANDAGKLRLAAAILLTLPGAPFVYYGEELGMQNGPGREDEWKR
TPMPWDRSEQGGFTRGDPWMPLGPGHESANVAVESSDPGSLLSRYRALVRARKGSAALARGDAVPLSTPGSALAYVRRVE
GETVLVVHNMGAGPLEIGGLEAPGAVAEAVFVDPGAALVRDGTGWRVVLPPRASGVWRVR

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=550, Percent_Identity=28.5454545454545, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI61744483, Length=468, Percent_Identity=25.8547008547009, Blast_Score=103, Evalue=6e-22,
Organism=Homo sapiens, GI61744477, Length=468, Percent_Identity=26.0683760683761, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI61744481, Length=468, Percent_Identity=25.8547008547009, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI61744479, Length=468, Percent_Identity=25.8547008547009, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI65506891, Length=468, Percent_Identity=25.8547008547009, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI61744475, Length=468, Percent_Identity=26.0683760683761, Blast_Score=102, Evalue=8e-22,
Organism=Escherichia coli, GI1790687, Length=512, Percent_Identity=33.59375, Blast_Score=254, Evalue=7e-69,
Organism=Escherichia coli, GI1786604, Length=512, Percent_Identity=28.3203125, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1789995, Length=477, Percent_Identity=27.0440251572327, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081873, Length=236, Percent_Identity=24.1525423728814, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI32565753, Length=491, Percent_Identity=26.4765784114053, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI25147709, Length=526, Percent_Identity=23.9543726235741, Blast_Score=108, Evalue=7e-24,
Organism=Saccharomyces cerevisiae, GI6322245, Length=497, Percent_Identity=30.5835010060362, Blast_Score=212, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6321726, Length=507, Percent_Identity=31.163708086785, Blast_Score=204, Evalue=4e-53,
Organism=Saccharomyces cerevisiae, GI6321731, Length=558, Percent_Identity=30.2867383512545, Blast_Score=200, Evalue=5e-52,
Organism=Saccharomyces cerevisiae, GI6319776, Length=558, Percent_Identity=30.2867383512545, Blast_Score=199, Evalue=8e-52,
Organism=Saccharomyces cerevisiae, GI6322241, Length=549, Percent_Identity=28.7795992714025, Blast_Score=194, Evalue=3e-50,
Organism=Saccharomyces cerevisiae, GI6322021, Length=549, Percent_Identity=28.7795992714025, Blast_Score=194, Evalue=3e-50,
Organism=Saccharomyces cerevisiae, GI6324416, Length=549, Percent_Identity=28.7795992714025, Blast_Score=194, Evalue=4e-50,
Organism=Drosophila melanogaster, GI24586593, Length=566, Percent_Identity=31.4487632508834, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI221330053, Length=573, Percent_Identity=30.3664921465969, Blast_Score=240, Evalue=2e-63,
Organism=Drosophila melanogaster, GI45549022, Length=542, Percent_Identity=29.7047970479705, Blast_Score=232, Evalue=4e-61,
Organism=Drosophila melanogaster, GI24583745, Length=511, Percent_Identity=31.1154598825832, Blast_Score=229, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24586591, Length=513, Percent_Identity=31.5789473684211, Blast_Score=229, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24586587, Length=527, Percent_Identity=31.6888045540797, Blast_Score=228, Evalue=9e-60,
Organism=Drosophila melanogaster, GI24586599, Length=541, Percent_Identity=30.8687615526802, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24583747, Length=521, Percent_Identity=31.0940499040307, Blast_Score=223, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24583749, Length=503, Percent_Identity=31.4115308151093, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24586597, Length=526, Percent_Identity=31.5589353612167, Blast_Score=219, Evalue=5e-57,
Organism=Drosophila melanogaster, GI24586589, Length=502, Percent_Identity=31.4741035856574, Blast_Score=216, Evalue=4e-56,
Organism=Drosophila melanogaster, GI281360393, Length=459, Percent_Identity=30.0653594771242, Blast_Score=190, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 58308; Mature: 58177

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSRRPAALLAAALAALACAHAPAGSSGAGPARATGAPAAPWWKGAVFYEVFVRSFADS
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
DGDGKGDLRGLTAKLDYLNDGDPATATDLGVDAIWLMPVFASPSYHGYDVTDYLKVNPDY
CCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC
GTEADLDRLIAEAHRRGVRVVLDLVLNHTSDQHPWFRESASSRTSPRRDWYVWRADDPGW
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCC
TQPWNPSQAAWYRRGGEWYYAIFWSGMPDLNYRNPAVREEAKRIAAHWLGKGVDGFRLDA
CCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
IRHLVETGPGAGQSGSQENHVFLRELAAAVRAGKPDAVLVGEVWSETDDIARYYGDGKDE
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHCCHHHHHHHHCCCHHH
LQLLFDFPLAKAIVEGVDAGDGGFTAHVLREVAAAYPPGAVDAPFLTNHDQFRVATQLAN
EEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
DAGKLRLAAAILLTLPGAPFVYYGEELGMQNGPGREDEWKRTPMPWDRSEQGGFTRGDPW
CCCHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MPLGPGHESANVAVESSDPGSLLSRYRALVRARKGSAALARGDAVPLSTPGSALAYVRRV
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHC
EGETVLVVHNMGAGPLEIGGLEAPGAVAEAVFVDPGAALVRDGTGWRVVLPPRASGVWRV
CCCEEEEEECCCCCCEEECCCCCCCHHEEEEEECCCHHEEECCCCCEEEECCCCCCCEEC
R
C
>Mature Secondary Structure 
TPSRRPAALLAAALAALACAHAPAGSSGAGPARATGAPAAPWWKGAVFYEVFVRSFADS
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
DGDGKGDLRGLTAKLDYLNDGDPATATDLGVDAIWLMPVFASPSYHGYDVTDYLKVNPDY
CCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC
GTEADLDRLIAEAHRRGVRVVLDLVLNHTSDQHPWFRESASSRTSPRRDWYVWRADDPGW
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCC
TQPWNPSQAAWYRRGGEWYYAIFWSGMPDLNYRNPAVREEAKRIAAHWLGKGVDGFRLDA
CCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
IRHLVETGPGAGQSGSQENHVFLRELAAAVRAGKPDAVLVGEVWSETDDIARYYGDGKDE
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHCCHHHHHHHHCCCHHH
LQLLFDFPLAKAIVEGVDAGDGGFTAHVLREVAAAYPPGAVDAPFLTNHDQFRVATQLAN
EEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
DAGKLRLAAAILLTLPGAPFVYYGEELGMQNGPGREDEWKRTPMPWDRSEQGGFTRGDPW
CCCHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MPLGPGHESANVAVESSDPGSLLSRYRALVRARKGSAALARGDAVPLSTPGSALAYVRRV
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHC
EGETVLVVHNMGAGPLEIGGLEAPGAVAEAVFVDPGAALVRDGTGWRVVLPPRASGVWRV
CCCEEEEEECCCCCCEEECCCCCCCHHEEEEEECCCHHEEECCCCCEEEECCCCCCCEEC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2455281 [H]