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The map label for this gene is ycdT [C]

Identifier: 220919232

GI number: 220919232

Start: 4638980

End: 4639897

Strand: Direct

Name: ycdT [C]

Synonym: A2cp1_4153

Alternate gene names: 220919232

Gene position: 4638980-4639897 (Clockwise)

Preceding gene: 220919231

Following gene: 220919233

Centisome position: 92.24

GC content: 74.73

Gene sequence:

>918_bases
ATGGCGCTCGCGCCGCCGCAGGATGCGGCGGTGCGCTCCGCGTTCGCGTCCACGCCGCTGGCGTGGCTGCTGGGCGCGTT
CGCCACCATCCTCTCGGTGGGCGCGGTGGACTCGCTCACCCGCAGCGACGTCTCGCTCATCCTCTTCTACCTGGTGCCCA
TCGGCTTCGGGACCTGGTTCGTCTCGCTGCGCTGGGGCGCGGCGCTGGCGGTGGCGAGCGCGGCGGTCTCCACCGGCGCG
GACGTGCTGTGGCGCCTGCAGCACGCCGCGCAGGACCTGGCGATCGGGACCCAGGTGTGGAACGGCTTCATGCTGCTCGG
CACCGCGACCGCGCTGGTGCTCGTGCTCGGCGCGCTGAAGGGGCGCCTGGAGGGGCAGGAGCTGCTCGCCCGCACCGACG
CGCTCACGCAGATCGCGAACCGGCGCGCGTTCATCGAGGCGGCGCAGCTCGAGCTGGAGCGCGCCCGCCGCCACGGCCGG
CCGCTCACGGTGGCGTACGTGGACTGCGACGACTTCAAGCTGGTGAACGACCGGCTCGGCCACGCGGAGGGCGACGCGCT
GCTCGTCACGGTGGCGCAGACGCTGCGGGGCGGCACGCGCGCGGTGGACGCGGTGGCGCGCCTCGGCGGCGACGAGTTCG
GCCTGCTGCTGCCCGAGACCGACGCGGCCATGGCCGATGCGCTGCTCGGACGCCTGCTGGCGACGCTGCAGGCCGCGGTC
ACGCGGCACGGCGGCTGGAAGGTGGGCTTCTCGGTGGGCGCCGCGGTGTTCCTGTCCCCGCCGGACGACGTGGACGACCT
GATGGCCCGCGCCGACGAGCTCATGTACGGCGCCAAGCGGCACGCCAAGGGCTCGATCCGCCTGGACGTGTTCGGGGGGA
TCGCGCCGGTGGCCGCGGACGGGACCGATCCGCGGTAG

Upstream 100 bases:

>100_bases
GCCGAGCCGTGACGGCGGGCGCAGCCGGTCGTCCCTTGGCTGCGGGGGAGGTAGCATCGGACGCGTGGAAGCCAGTCAGC
CGGGCCGGACGCCAGCGGTG

Downstream 100 bases:

>100_bases
ACAGGGGCATGCGCTTCTTCGCCACCTGCGCCAAGGGCACCGAGGGTGCCCTGCGGCGCGAGCTGTCCGGCCTCCGCCTC
CCCGCCGTCCGCGGCGATCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MALAPPQDAAVRSAFASTPLAWLLGAFATILSVGAVDSLTRSDVSLILFYLVPIGFGTWFVSLRWGAALAVASAAVSTGA
DVLWRLQHAAQDLAIGTQVWNGFMLLGTATALVLVLGALKGRLEGQELLARTDALTQIANRRAFIEAAQLELERARRHGR
PLTVAYVDCDDFKLVNDRLGHAEGDALLVTVAQTLRGGTRAVDAVARLGGDEFGLLLPETDAAMADALLGRLLATLQAAV
TRHGGWKVGFSVGAAVFLSPPDDVDDLMARADELMYGAKRHAKGSIRLDVFGGIAPVAADGTDPR

Sequences:

>Translated_305_residues
MALAPPQDAAVRSAFASTPLAWLLGAFATILSVGAVDSLTRSDVSLILFYLVPIGFGTWFVSLRWGAALAVASAAVSTGA
DVLWRLQHAAQDLAIGTQVWNGFMLLGTATALVLVLGALKGRLEGQELLARTDALTQIANRRAFIEAAQLELERARRHGR
PLTVAYVDCDDFKLVNDRLGHAEGDALLVTVAQTLRGGTRAVDAVARLGGDEFGLLLPETDAAMADALLGRLLATLQAAV
TRHGGWKVGFSVGAAVFLSPPDDVDDLMARADELMYGAKRHAKGSIRLDVFGGIAPVAADGTDPR
>Mature_304_residues
ALAPPQDAAVRSAFASTPLAWLLGAFATILSVGAVDSLTRSDVSLILFYLVPIGFGTWFVSLRWGAALAVASAAVSTGAD
VLWRLQHAAQDLAIGTQVWNGFMLLGTATALVLVLGALKGRLEGQELLARTDALTQIANRRAFIEAAQLELERARRHGRP
LTVAYVDCDDFKLVNDRLGHAEGDALLVTVAQTLRGGTRAVDAVARLGGDEFGLLLPETDAAMADALLGRLLATLQAAVT
RHGGWKVGFSVGAAVFLSPPDDVDDLMARADELMYGAKRHAKGSIRLDVFGGIAPVAADGTDPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=248, Percent_Identity=26.6129032258064, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI145693134, Length=189, Percent_Identity=33.8624338624339, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=34.5679012345679, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=31.6455696202532, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081974, Length=212, Percent_Identity=27.3584905660377, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=32.9411764705882, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=30.1675977653631, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787802, Length=224, Percent_Identity=27.6785714285714, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=33.7423312883436, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=30.0613496932515, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787816, Length=154, Percent_Identity=31.1688311688312, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 32107; Mature: 31976

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS00047 HISTONE_H4 ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAPPQDAAVRSAFASTPLAWLLGAFATILSVGAVDSLTRSDVSLILFYLVPIGFGTWF
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLRWGAALAVASAAVSTGADVLWRLQHAAQDLAIGTQVWNGFMLLGTATALVLVLGALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GRLEGQELLARTDALTQIANRRAFIEAAQLELERARRHGRPLTVAYVDCDDFKLVNDRLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCC
HAEGDALLVTVAQTLRGGTRAVDAVARLGGDEFGLLLPETDAAMADALLGRLLATLQAAV
CCCCCCHHEEHHHHHCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
TRHGGWKVGFSVGAAVFLSPPDDVDDLMARADELMYGAKRHAKGSIRLDVFGGIAPVAAD
HHCCCEEEEHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECC
GTDPR
CCCCC
>Mature Secondary Structure 
ALAPPQDAAVRSAFASTPLAWLLGAFATILSVGAVDSLTRSDVSLILFYLVPIGFGTWF
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLRWGAALAVASAAVSTGADVLWRLQHAAQDLAIGTQVWNGFMLLGTATALVLVLGALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GRLEGQELLARTDALTQIANRRAFIEAAQLELERARRHGRPLTVAYVDCDDFKLVNDRLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCC
HAEGDALLVTVAQTLRGGTRAVDAVARLGGDEFGLLLPETDAAMADALLGRLLATLQAAV
CCCCCCHHEEHHHHHCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
TRHGGWKVGFSVGAAVFLSPPDDVDDLMARADELMYGAKRHAKGSIRLDVFGGIAPVAAD
HHCCCEEEEHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECC
GTDPR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]