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The map label for this gene is ybjY [C]

Identifier: 220918653

GI number: 220918653

Start: 3978348

End: 3979610

Strand: Reverse

Name: ybjY [C]

Synonym: A2cp1_3561

Alternate gene names: 220918653

Gene position: 3979610-3978348 (Counterclockwise)

Preceding gene: 220918660

Following gene: 220918652

Centisome position: 79.13

GC content: 82.42

Gene sequence:

>1263_bases
ATGGACGCCCCCGCGAGCCCGCGCCGCGCCATCGCGCGCCTGCTCCGGTCCCGCGCCGGGCGGGCCGCCGCCGGGCTCGC
GCTGGCGCTCGCGGCCGTGGCGGCGGTGCGCGCGGCGCGCGGGCCGGCGGCGCCGGGCTGGGCGGTGGAGCGGCGGCCGC
TGGTCCAGCGGGTGGTGGCGAGCGGGCGGGTGATGGCGCCGGCCCGCATCCAGGTCGGCGCGGTCGCGACCGGCAAGGTG
GCCGCGGTCCGGGTGGACGAGGGCGACGCGGTCCGCGCGGGCGACCTGCTGGTGCAGCTCGACGACGCGGAGGCGCGCGC
CGCGCTGTCGCAGGCGCGCGCGCAGGTGCTCCAGGCGGCGGCGCGGCTGGAGCAGTCGCGCGGCCCGGCGGCGCGCGGGG
CGAGCGAGGCGCTGCGCCAGGCCGAGCTGCGGGTCGAGCTGGCGGAGCGCGCGCGGGAGCGGGCGCGGAGCCTGTCCGAC
GCGGGGAGCGCCAGCGTCGCCCAGCTGGACGACGCGGAGCAGGCGCTCGCGCTGGCCCGGAGCGCGCGGGAGAGCGCGCT
CGCCCAGGCCGCGGCGGCCGGAGGCGGCGGCCCGGACCAGCGCCTGGCCGAGGCGGCGCTCGCGGCGGCCCGCGGCGCCG
AGGAGGTGGCGCGCGCGCGGCTGGAGGACCGCCAGCTCCGCGCGCCGGCCGCCGCGACGGTGATCCTCCGCGACGTGGAG
CCCGGCGACACGGTGACCGCCGGCGCGCGGCTGCTGGTGCTGGCCCGCACCGGCGAGACGCGGCTCTCGGTGGAGCCGGA
CGAGAAGAACCTGGCGCTGCTGCGCCAGGGCCAGCCGGCGCGCGCGGTGGCGGACGCGTTCCCGGACGCGCCGTTCGACG
CGGCGGTGTCCTTCCTCGCGCCGTCGGTGGATCCCGCCCGCGGCACGGTCGAGGTGCGCCTCGCGGTCCCCGCGCCGCCG
CCGTTCCTGCGCCCGGACATGACCGTCTCGGTGAACGTGGAGGTCGGGCGCAAGGCGGACGCGCTCGTGCTCCCCGCCGA
CGCGGTCCGCGACGCGGGCGGCTCGCCGTGGGTGCTGGCGGTCCGCGGCGGCCGGGCGGAGCGGCGCGCGGTGCGCCTCG
GGCTCCGGGGCGACGCGCTGGTGGAGATCGCGGGTGGCCTCGCGGCGGGCGACGAGGTGCTGGCGCCCTCCGCCGCGGTG
GCGGAGGGGAGCCGCGTGCGGGTGCGCCGCCTGCCCGGGCCGGAGCTGGGCCGTGCCCTTTGA

Upstream 100 bases:

>100_bases
CTCGGGGCGTCGGCGCGCGAGCCCTGCGGCCGTGTCGCGGCGGGTGGCAGCGGCACCGCGGCGCTGGGCGGCCGCACCAC
GTCGGTGTACCAATGGGGAC

Downstream 100 bases:

>100_bases
GCTGTTCGTCGCGCTGCGGTTCCTGCGCGAGGGCCGCGCCCAGACCGCGCTGGTGCTGGGCGGCGCCACGGTGGGCGTGG
GGGTGATCGTCTTCCTGACC

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MDAPASPRRAIARLLRSRAGRAAAGLALALAAVAAVRAARGPAAPGWAVERRPLVQRVVASGRVMAPARIQVGAVATGKV
AAVRVDEGDAVRAGDLLVQLDDAEARAALSQARAQVLQAAARLEQSRGPAARGASEALRQAELRVELAERARERARSLSD
AGSASVAQLDDAEQALALARSARESALAQAAAAGGGGPDQRLAEAALAAARGAEEVARARLEDRQLRAPAAATVILRDVE
PGDTVTAGARLLVLARTGETRLSVEPDEKNLALLRQGQPARAVADAFPDAPFDAAVSFLAPSVDPARGTVEVRLAVPAPP
PFLRPDMTVSVNVEVGRKADALVLPADAVRDAGGSPWVLAVRGGRAERRAVRLGLRGDALVEIAGGLAAGDEVLAPSAAV
AEGSRVRVRRLPGPELGRAL

Sequences:

>Translated_420_residues
MDAPASPRRAIARLLRSRAGRAAAGLALALAAVAAVRAARGPAAPGWAVERRPLVQRVVASGRVMAPARIQVGAVATGKV
AAVRVDEGDAVRAGDLLVQLDDAEARAALSQARAQVLQAAARLEQSRGPAARGASEALRQAELRVELAERARERARSLSD
AGSASVAQLDDAEQALALARSARESALAQAAAAGGGGPDQRLAEAALAAARGAEEVARARLEDRQLRAPAAATVILRDVE
PGDTVTAGARLLVLARTGETRLSVEPDEKNLALLRQGQPARAVADAFPDAPFDAAVSFLAPSVDPARGTVEVRLAVPAPP
PFLRPDMTVSVNVEVGRKADALVLPADAVRDAGGSPWVLAVRGGRAERRAVRLGLRGDALVEIAGGLAAGDEVLAPSAAV
AEGSRVRVRRLPGPELGRAL
>Mature_420_residues
MDAPASPRRAIARLLRSRAGRAAAGLALALAAVAAVRAARGPAAPGWAVERRPLVQRVVASGRVMAPARIQVGAVATGKV
AAVRVDEGDAVRAGDLLVQLDDAEARAALSQARAQVLQAAARLEQSRGPAARGASEALRQAELRVELAERARERARSLSD
AGSASVAQLDDAEQALALARSARESALAQAAAAGGGGPDQRLAEAALAAARGAEEVARARLEDRQLRAPAAATVILRDVE
PGDTVTAGARLLVLARTGETRLSVEPDEKNLALLRQGQPARAVADAFPDAPFDAAVSFLAPSVDPARGTVEVRLAVPAPP
PFLRPDMTVSVNVEVGRKADALVLPADAVRDAGGSPWVLAVRGGRAERRAVRLGLRGDALVEIAGGLAAGDEVLAPSAAV
AEGSRVRVRRLPGPELGRAL

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0194 family [H]

Homologues:

Organism=Escherichia coli, GI87081796, Length=389, Percent_Identity=24.9357326478149, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787013, Length=274, Percent_Identity=29.5620437956204, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1789900, Length=289, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082036, Length=358, Percent_Identity=24.3016759776536, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143
- InterPro:   IPR022936 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 43071; Mature: 43071

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAPASPRRAIARLLRSRAGRAAAGLALALAAVAAVRAARGPAAPGWAVERRPLVQRVVA
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
SGRVMAPARIQVGAVATGKVAAVRVDEGDAVRAGDLLVQLDDAEARAALSQARAQVLQAA
CCCEECCCEEEEEEEECCCEEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHH
ARLEQSRGPAARGASEALRQAELRVELAERARERARSLSDAGSASVAQLDDAEQALALAR
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
SARESALAQAAAAGGGGPDQRLAEAALAAARGAEEVARARLEDRQLRAPAAATVILRDVE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
PGDTVTAGARLLVLARTGETRLSVEPDEKNLALLRQGQPARAVADAFPDAPFDAAVSFLA
CCCCEECCCEEEEEEECCCCEEEECCCCCCHHEEECCCCHHHHHHHCCCCCHHHHHHHHC
PSVDPARGTVEVRLAVPAPPPFLRPDMTVSVNVEVGRKADALVLPADAVRDAGGSPWVLA
CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECHHHHHCCCCCCEEEE
VRGGRAERRAVRLGLRGDALVEIAGGLAAGDEVLAPSAAVAEGSRVRVRRLPGPELGRAL
EECCCCCCHHEEECCCCCHHHEECCCCCCCCHHHCCCHHHCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MDAPASPRRAIARLLRSRAGRAAAGLALALAAVAAVRAARGPAAPGWAVERRPLVQRVVA
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
SGRVMAPARIQVGAVATGKVAAVRVDEGDAVRAGDLLVQLDDAEARAALSQARAQVLQAA
CCCEECCCEEEEEEEECCCEEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHH
ARLEQSRGPAARGASEALRQAELRVELAERARERARSLSDAGSASVAQLDDAEQALALAR
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHH
SARESALAQAAAAGGGGPDQRLAEAALAAARGAEEVARARLEDRQLRAPAAATVILRDVE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
PGDTVTAGARLLVLARTGETRLSVEPDEKNLALLRQGQPARAVADAFPDAPFDAAVSFLA
CCCCEECCCEEEEEEECCCCEEEECCCCCCHHEEECCCCHHHHHHHCCCCCHHHHHHHHC
PSVDPARGTVEVRLAVPAPPPFLRPDMTVSVNVEVGRKADALVLPADAVRDAGGSPWVLA
CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECHHHHHCCCCCCEEEE
VRGGRAERRAVRLGLRGDALVEIAGGLAAGDEVLAPSAAVAEGSRVRVRRLPGPELGRAL
EECCCCCCHHEEECCCCCHHHEECCCCCCCCHHHCCCHHHCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA