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The map label for this gene is pal [H]

Identifier: 220918574

GI number: 220918574

Start: 3888423

End: 3889151

Strand: Reverse

Name: pal [H]

Synonym: A2cp1_3482

Alternate gene names: 220918574

Gene position: 3889151-3888423 (Counterclockwise)

Preceding gene: 220918580

Following gene: 220918573

Centisome position: 77.33

GC content: 70.64

Gene sequence:

>729_bases
ATGCGTCGTGTTCTCCTTCTCGCCCTGACCGTGTCAGGTGCCCTCGTCCTCGGCGGCTGTCCGTCGAAGCCGAAGAACGG
TGAGTGCAAGACCAGCCAGGACTGCGCCGAGCAGGAGGGGTACGGCAAGGTCTGCGTCGAGGGCCGCTGCCAGGAGTGCG
GCGCCGACTCCGACTGCAAGGAAGGCTTCGTGTGCCGCGCGAACGCGTGCGTTCCGAAGCCCCAGTGCGCGGCCGACACC
GACTGCCCCGCCGGCCAGACCTGCCAGGGCGAGCGCTGCGTGGCCCGCGAGCCCGGCTCCTGCGCGTCGGATCGCGATTG
CGGCGCCGGTGAGAAGTGCCAGGCCGGCCGCTGCGCCGCCGCCGCCCCCGAGGCGTCCGTTCCGCCCGAGTGCGCCGACG
TCACCGCGTTCAGCGTCCACTTCGCCTTCGATCGCTCGAACCTGACCCCCGAGTCGCAGCAGAACCTGCAGAAGCTGGCC
GACTGCCTGAAGCAGGCCCCGGCGAAGCGCGTGCTCGTGCAGGGCAACTGCGACGAGCGCGGCACCGCGCAGTACAACGT
CGCGCTCGGCAACCGCCGCGCCGAGTCGGCCAAGAAGTACCTGACCGACCTCGGCGTCAGCTCCTCCGTCGACACGGTCA
GCTACGGCGAGGAGAAGCCGGTCTGCTCCGAGGCGACCGAGGCCTGCTGGTCCAAGAACCGCCGCGACGACTTCCAGATC
GAGCGGTGA

Upstream 100 bases:

>100_bases
GGTTCCGCGACGAGGAAATCCTTTGACAGGCGTTCCGAATGGAGCCAATAAGCGGGCGTCCCCAAGTTCCCAGACTTGTC
ATTTTCGAATGGAGGTCGTC

Downstream 100 bases:

>100_bases
GCCTCCGCACCTCCATCCTCCGGGCCGCCGCGCCGGCGCTCGCGCTCCTGCTGACCGCATGCTGGGTCCCGCTGGAGCGC
GGGCGTCAGATGGAGGCGCG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRRVLLLALTVSGALVLGGCPSKPKNGECKTSQDCAEQEGYGKVCVEGRCQECGADSDCKEGFVCRANACVPKPQCAADT
DCPAGQTCQGERCVAREPGSCASDRDCGAGEKCQAGRCAAAAPEASVPPECADVTAFSVHFAFDRSNLTPESQQNLQKLA
DCLKQAPAKRVLVQGNCDERGTAQYNVALGNRRAESAKKYLTDLGVSSSVDTVSYGEEKPVCSEATEACWSKNRRDDFQI
ER

Sequences:

>Translated_242_residues
MRRVLLLALTVSGALVLGGCPSKPKNGECKTSQDCAEQEGYGKVCVEGRCQECGADSDCKEGFVCRANACVPKPQCAADT
DCPAGQTCQGERCVAREPGSCASDRDCGAGEKCQAGRCAAAAPEASVPPECADVTAFSVHFAFDRSNLTPESQQNLQKLA
DCLKQAPAKRVLVQGNCDERGTAQYNVALGNRRAESAKKYLTDLGVSSSVDTVSYGEEKPVCSEATEACWSKNRRDDFQI
ER
>Mature_242_residues
MRRVLLLALTVSGALVLGGCPSKPKNGECKTSQDCAEQEGYGKVCVEGRCQECGADSDCKEGFVCRANACVPKPQCAADT
DCPAGQTCQGERCVAREPGSCASDRDCGAGEKCQAGRCAAAAPEASVPPECADVTAFSVHFAFDRSNLTPESQQNLQKLA
DCLKQAPAKRVLVQGNCDERGTAQYNVALGNRRAESAKKYLTDLGVSSSVDTVSYGEEKPVCSEATEACWSKNRRDDFQI
ER

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=43.8775510204082, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25722; Mature: 25722

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
9.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
9.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVLLLALTVSGALVLGGCPSKPKNGECKTSQDCAEQEGYGKVCVEGRCQECGADSDCK
CCCEEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHHCCCCCCCC
EGFVCRANACVPKPQCAADTDCPAGQTCQGERCVAREPGSCASDRDCGAGEKCQAGRCAA
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAPEASVPPECADVTAFSVHFAFDRSNLTPESQQNLQKLADCLKQAPAKRVLVQGNCDER
CCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHEEEEECCCCCC
GTAQYNVALGNRRAESAKKYLTDLGVSSSVDTVSYGEEKPVCSEATEACWSKNRRDDFQI
CCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
ER
CC
>Mature Secondary Structure
MRRVLLLALTVSGALVLGGCPSKPKNGECKTSQDCAEQEGYGKVCVEGRCQECGADSDCK
CCCEEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHHCCCCCCCC
EGFVCRANACVPKPQCAADTDCPAGQTCQGERCVAREPGSCASDRDCGAGEKCQAGRCAA
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAPEASVPPECADVTAFSVHFAFDRSNLTPESQQNLQKLADCLKQAPAKRVLVQGNCDER
CCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHEEEEECCCCCC
GTAQYNVALGNRRAESAKKYLTDLGVSSSVDTVSYGEEKPVCSEATEACWSKNRRDDFQI
CCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
ER
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]