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The map label for this gene is fecI [C]

Identifier: 220918497

GI number: 220918497

Start: 3792098

End: 3792982

Strand: Reverse

Name: fecI [C]

Synonym: A2cp1_3403

Alternate gene names: 220918497

Gene position: 3792982-3792098 (Counterclockwise)

Preceding gene: 220918499

Following gene: 220918496

Centisome position: 75.42

GC content: 73.56

Gene sequence:

>885_bases
ATGAAGGAAGACGAGGCTCTGGCCGGGCGGTTCGAGGCCCACCGCGCGCATCTCCGCGCGGTGGCCTATCGGATGCTCGG
ATCGCTGAACGAGGCCGAGGACGCCGTCCAGGAAGCCTGGATCCGCCTCAGCGGCGCCGACACGGACGGGGTGAGCAGCC
TCCGCGGGTGGCTCACCACCGTGGTTGCCCGCGTGTGCCTCGACATGCTCAGGTCGCGCCGATCCCGGCGCGAAGAGCCG
GTCGGCGTCCGCCTGCCCGAGCCGATCGTGAGCGGTGCGGGCGGCCCCGATCCCGAGACCGAGGCTCTCCTGTCGGGCTC
GGTCGGGCTCGCGCTCCTCGTGGTGCTCGACTCCCTCGCGCCCGCGGAGCGGCTCGCTTTCGTGCTCCATGACATGTTCG
GCGTCCCGTTCGAGGATATCGCGCGCGTGGTCGGCCGTTCACCGGAGGCGGCCCGGCAGCTCGCGAGCCGGGCGCGCCGC
CGGGTCCGTGGCGCCGCGCCGAGCCCTGACCCGGATCTCTCCCGGCAGCGGGTGATCGTCGATGCGTTCCTCGCCGCGTC
GCGCGGAGGAGACTTCGACGCGCTGCTCCGAATCCTGGATCCGGACGTCGTCCTCCGGGCCGACCGCGGCCCGGCCGCGC
CGGGCGGGACGATCGTAATCCGCGGCGCGCGGGCGGCGGCCGACCAGTCGATCCACGCCGCCCGGGCCGCCGGCGAGACC
CGGGCCGCGCTCGTCAACGGCGCTGCGGGCCTCGTCTCGTTCGATAAGGAAGGGCAGCCCTTCTCGGTGCTGGGGTTCAC
GGTCGCGCACGGCAAGATCGTCGAGATCGACGTGCTCGCCGATCCCGAGCGGCTCCGCGCGCTCGACCTGAAGATCCCCG
GGTGA

Upstream 100 bases:

>100_bases
GATCGGTCTCGCCCGTGCGGCCTCCGTGGTCGTTCCTCGTCACGCCAGGCTCGCCTCGTTCGTCACGCAGTAGACGGAAC
GCGACCAAGGAACGTGACCG

Downstream 100 bases:

>100_bases
CGCGACGACGACGGCGCCAGTCGCGTGCGAACCATGGGGTTGCGGCGCGCGTCGTCGCTCGCGCGTCGAGCCCCGTCGTG
CCGGGGGCAACCGGGCGCGC

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF-Sigma Factor; Sigma-; ECF Family RNA Polymerase Sigma Factor; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigI; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Region 2 Domain-Containing Protein; Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; Sigma Factor Sigma; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigJ-Like Protein; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; DNA-Directed RNA Polymeracialized Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Type Sigma Factor SigJ

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKEDEALAGRFEAHRAHLRAVAYRMLGSLNEAEDAVQEAWIRLSGADTDGVSSLRGWLTTVVARVCLDMLRSRRSRREEP
VGVRLPEPIVSGAGGPDPETEALLSGSVGLALLVVLDSLAPAERLAFVLHDMFGVPFEDIARVVGRSPEAARQLASRARR
RVRGAAPSPDPDLSRQRVIVDAFLAASRGGDFDALLRILDPDVVLRADRGPAAPGGTIVIRGARAAADQSIHAARAAGET
RAALVNGAAGLVSFDKEGQPFSVLGFTVAHGKIVEIDVLADPERLRALDLKIPG

Sequences:

>Translated_294_residues
MKEDEALAGRFEAHRAHLRAVAYRMLGSLNEAEDAVQEAWIRLSGADTDGVSSLRGWLTTVVARVCLDMLRSRRSRREEP
VGVRLPEPIVSGAGGPDPETEALLSGSVGLALLVVLDSLAPAERLAFVLHDMFGVPFEDIARVVGRSPEAARQLASRARR
RVRGAAPSPDPDLSRQRVIVDAFLAASRGGDFDALLRILDPDVVLRADRGPAAPGGTIVIRGARAAADQSIHAARAAGET
RAALVNGAAGLVSFDKEGQPFSVLGFTVAHGKIVEIDVLADPERLRALDLKIPG
>Mature_294_residues
MKEDEALAGRFEAHRAHLRAVAYRMLGSLNEAEDAVQEAWIRLSGADTDGVSSLRGWLTTVVARVCLDMLRSRRSRREEP
VGVRLPEPIVSGAGGPDPETEALLSGSVGLALLVVLDSLAPAERLAFVLHDMFGVPFEDIARVVGRSPEAARQLASRARR
RVRGAAPSPDPDLSRQRVIVDAFLAASRGGDFDALLRILDPDVVLRADRGPAAPGGTIVIRGARAAADQSIHAARAAGET
RAALVNGAAGLVSFDKEGQPFSVLGFTVAHGKIVEIDVLADPERLRALDLKIPG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31231; Mature: 31231

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEDEALAGRFEAHRAHLRAVAYRMLGSLNEAEDAVQEAWIRLSGADTDGVSSLRGWLTT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
VVARVCLDMLRSRRSRREEPVGVRLPEPIVSGAGGPDPETEALLSGSVGLALLVVLDSLA
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHCC
PAERLAFVLHDMFGVPFEDIARVVGRSPEAARQLASRARRRVRGAAPSPDPDLSRQRVIV
HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
DAFLAASRGGDFDALLRILDPDVVLRADRGPAAPGGTIVIRGARAAADQSIHAARAAGET
HHHHHHCCCCCHHHHHHHHCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCH
RAALVNGAAGLVSFDKEGQPFSVLGFTVAHGKIVEIDVLADPERLRALDLKIPG
HHHHHCCCHHHEEECCCCCCEEEEEEEEECCEEEEEEEECCHHHHHEEEEECCC
>Mature Secondary Structure
MKEDEALAGRFEAHRAHLRAVAYRMLGSLNEAEDAVQEAWIRLSGADTDGVSSLRGWLTT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
VVARVCLDMLRSRRSRREEPVGVRLPEPIVSGAGGPDPETEALLSGSVGLALLVVLDSLA
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHCC
PAERLAFVLHDMFGVPFEDIARVVGRSPEAARQLASRARRRVRGAAPSPDPDLSRQRVIV
HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
DAFLAASRGGDFDALLRILDPDVVLRADRGPAAPGGTIVIRGARAAADQSIHAARAAGET
HHHHHHCCCCCHHHHHHHHCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCH
RAALVNGAAGLVSFDKEGQPFSVLGFTVAHGKIVEIDVLADPERLRALDLKIPG
HHHHHCCCHHHEEECCCCCCEEEEEEEEECCEEEEEEEECCHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA