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The map label for this gene is ycfS [H]

Identifier: 220918200

GI number: 220918200

Start: 3429595

End: 3430443

Strand: Reverse

Name: ycfS [H]

Synonym: A2cp1_3103

Alternate gene names: 220918200

Gene position: 3430443-3429595 (Counterclockwise)

Preceding gene: 220918213

Following gene: 220918198

Centisome position: 68.21

GC content: 76.56

Gene sequence:

>849_bases
ATGGGGTCGCCGGTCCTCGTCCTGCTGCTCTCGCTGGTGCCCGCCGCCGGGCCGGACGGCGGCGAGGTGGTCGGCGCCAT
CGGCGCCCACCGCGTCGGGCGGGGCGAGTCGCTCATCGAGATCGCGCGCCGGTACGACCTCGGGTTCGGCGAGATCGCGG
CCGCGAACCCGCGCCTGGACGCGTTCGTCCCGCCGCCGGGCACCGTCGCGACCGTGCCGACGGCCTGGATCCTCCCGGCT
GCCGCCGAGGCGGGGACCGTGGTCGTGAACCTGTCGGAGATGCGCCTCTACTACCTGCGGCCCGGGGCCGGGCCGCTCCT
CAGCTTCCCGATCGGCGTGGCGGTGGAGGCGGGCGCGACGCCGCTCGGCGTGCTCACCGTGGAGCAGAAGCTGGTCTCGC
CGACGTGGTACCCGACGCCCGCGATCCGGCGCGAGGATCCCGAGCTGCCCGCCGCGGTGCCGCCGGGACCGGAGAACCCG
CTCGGCAGCCACGCGCTCCGGCTCTCCGTGCCGACCCTCCTCATCCACGGCACCAACCGGCCGTTCGGCGTGGGGCGGCG
CGTGTCGCACGGCTGCATCCGGCTCTACCCCGAGGACATGCCGCTGCTCTACCGCGCGGTGCGCGTCGGCACCCGGGTCG
CGATCGTGCGGGAGCCGGTCAAGGTGGGCGTCCGGGACGGACGCGTGCTGGTCGAGGTGCACCGCGACGACGCGGCCGCG
GCCGCTCCGGGGGAGCTCGCGGAGCGGCTGCTGCGGGATCGCGGCGTGCGGGAGCGGGTGGATCCGGGCAAGCTCGAGCG
CGCGCTCGCGGCGCGCAGCGGGATGCCCGTGGACGTGAGCGCCGAGTGA

Upstream 100 bases:

>100_bases
CCGCGCGCACCCCCCCGGCGCAGTCCGCCAGGGCGGTCGCGGCGAGGCGCTGCTCGCGCGATGGTGGGACGGCGGAGTCC
GCCCGCACGCGGGTGCCGAC

Downstream 100 bases:

>100_bases
CGGGGCGCGGCGGCCGGCAGCCGCCGCGCGCCCCCAGCGTGCGCCGCTACATCTTGCCCTTCACCTGCGTCAGCTCGAAC
GCCTTCGCGGACTTCTGGGC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MGSPVLVLLLSLVPAAGPDGGEVVGAIGAHRVGRGESLIEIARRYDLGFGEIAAANPRLDAFVPPPGTVATVPTAWILPA
AAEAGTVVVNLSEMRLYYLRPGAGPLLSFPIGVAVEAGATPLGVLTVEQKLVSPTWYPTPAIRREDPELPAAVPPGPENP
LGSHALRLSVPTLLIHGTNRPFGVGRRVSHGCIRLYPEDMPLLYRAVRVGTRVAIVREPVKVGVRDGRVLVEVHRDDAAA
AAPGELAERLLRDRGVRERVDPGKLERALAARSGMPVDVSAE

Sequences:

>Translated_282_residues
MGSPVLVLLLSLVPAAGPDGGEVVGAIGAHRVGRGESLIEIARRYDLGFGEIAAANPRLDAFVPPPGTVATVPTAWILPA
AAEAGTVVVNLSEMRLYYLRPGAGPLLSFPIGVAVEAGATPLGVLTVEQKLVSPTWYPTPAIRREDPELPAAVPPGPENP
LGSHALRLSVPTLLIHGTNRPFGVGRRVSHGCIRLYPEDMPLLYRAVRVGTRVAIVREPVKVGVRDGRVLVEVHRDDAAA
AAPGELAERLLRDRGVRERVDPGKLERALAARSGMPVDVSAE
>Mature_281_residues
GSPVLVLLLSLVPAAGPDGGEVVGAIGAHRVGRGESLIEIARRYDLGFGEIAAANPRLDAFVPPPGTVATVPTAWILPAA
AEAGTVVVNLSEMRLYYLRPGAGPLLSFPIGVAVEAGATPLGVLTVEQKLVSPTWYPTPAIRREDPELPAAVPPGPENPL
GSHALRLSVPTLLIHGTNRPFGVGRRVSHGCIRLYPEDMPLLYRAVRVGTRVAIVREPVKVGVRDGRVLVEVHRDDAAAA
APGELAERLLRDRGVRERVDPGKLERALAARSGMPVDVSAE

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=278, Percent_Identity=40.6474820143885, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1788299, Length=279, Percent_Identity=39.7849462365591, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1787968, Length=278, Percent_Identity=40.2877697841727, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1787040, Length=278, Percent_Identity=38.4892086330935, Blast_Score=164, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 29739; Mature: 29608

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSPVLVLLLSLVPAAGPDGGEVVGAIGAHRVGRGESLIEIARRYDLGFGEIAAANPRLD
CCCHHHHHHHHHHCCCCCCCCCEEECHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCE
AFVPPPGTVATVPTAWILPAAAEAGTVVVNLSEMRLYYLRPGAGPLLSFPIGVAVEAGAT
EECCCCCCEEECCHHEEEECCCCCCEEEEEEEHEEEEEECCCCCCEEECCCCEEEECCCC
PLGVLTVEQKLVSPTWYPTPAIRREDPELPAAVPPGPENPLGSHALRLSVPTLLIHGTNR
CEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCC
PFGVGRRVSHGCIRLYPEDMPLLYRAVRVGTRVAIVREPVKVGVRDGRVLVEVHRDDAAA
CCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEEEEEECHHHCCCCCCEEEEEEECCCCCC
AAPGELAERLLRDRGVRERVDPGKLERALAARSGMPVDVSAE
CCCHHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
GSPVLVLLLSLVPAAGPDGGEVVGAIGAHRVGRGESLIEIARRYDLGFGEIAAANPRLD
CCHHHHHHHHHHCCCCCCCCCEEECHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCE
AFVPPPGTVATVPTAWILPAAAEAGTVVVNLSEMRLYYLRPGAGPLLSFPIGVAVEAGAT
EECCCCCCEEECCHHEEEECCCCCCEEEEEEEHEEEEEECCCCCCEEECCCCEEEECCCC
PLGVLTVEQKLVSPTWYPTPAIRREDPELPAAVPPGPENPLGSHALRLSVPTLLIHGTNR
CEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCC
PFGVGRRVSHGCIRLYPEDMPLLYRAVRVGTRVAIVREPVKVGVRDGRVLVEVHRDDAAA
CCCCCCCCCCCEEEECCCCHHHHHHHHHHCCEEEEEECHHHCCCCCCEEEEEEECCCCCC
AAPGELAERLLRDRGVRERVDPGKLERALAARSGMPVDVSAE
CCCHHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]