Click here to switch to the map view.

The map label for this gene is ybiR [C]

Identifier: 220917368

GI number: 220917368

Start: 2518855

End: 2520144

Strand: Reverse

Name: ybiR [C]

Synonym: A2cp1_2268

Alternate gene names: 220917368

Gene position: 2520144-2518855 (Counterclockwise)

Preceding gene: 220917370

Following gene: 220917367

Centisome position: 50.11

GC content: 75.5

Gene sequence:

>1290_bases
GTGGGCTGGGCCGGCCGCCCCCTCCCCGGGGCGTGCTACAAGGCGCGGGTGATCGCCGCCGTCGCCGTGTTCGCCCTCAC
CTACGTGGCCGTCGCCGCGGGACGCTTCCCCTATCTCTCGGTGGATCGCCCCGCGGCCGCCCTGCTCGGCGCCGTCCTGA
TGGTCGCGCTGGGCGTGCTCACGCCGGCGGAGGGCGGCGCGGCGGTGAACGGCGAGACGCTGGGCCTGCTCCTCGGGATG
ATGGTCCTGACCGCCTACCTGGGGGAGGCGGGGTTCTTTCGGTGGGCCAGCTGGAGGGTGCTGCGCGCGGCCGGGACGCC
GCGGACGCTCCTCTGGGGCGTGGTGTTCACCGCCGGTGCGCTCTCGGCGCTGCTCGTGAACGACACCGTCTGCCTGATGA
TGACCCCGCTCGTGCTGCGGATGGTGGACGACGCGGACCTGCCGCCGCTGCCGTACCTGCTGGCGGTCGCGTTCGGGTCG
AACGCGGGCTCGGCGGCCACGCTCACCGGCAACCCGCAGAACATGATCGTCGGGACGCTCTCGGGCATCGGCTACGGCCG
CTTCGCCGCGGCGCTGGCGCTCCCGGCGCTCGCCTCGCTCCTGCTGGTGGCCGCGCTGCTCCACGCGCTGTTCCGCCGCG
TCCTGCCCCGCGGCGCGCTCACCGGCGGCCGGCCGGCGGCGCCCGAGGTGGACCGGGCGCTGCTCGCGAAGGCGCTCGGC
GCGCTGGCGGTGGCGGTGGCGGGGTTCCTGCTCGGCCTCGAGCTCGCCTGGACCGCGCTGTTCGCGGCGGCGCTCTGCAT
GGCGGTGGCCGGGCGCGCGCCGCGGGAGGCGCTGCAGCGGGTGGACTGGCCGCTGCTCGTGTTCTTCGCCGGGCTGTTCG
TGGTGGTGGCGGGCATCGGGCGGGCCGGCGTGACCGAGCGGATGTACCAGGCGGTGGCCCCGCTGCTCGGGGCGGATCCG
GCGCGCCAGTCGGCGGTGTTCGGCCTGTTCTCGATCGCGGCGTCGCAGGTGGTCTCGAACGTGCCGTTCGTGATCCTGGC
CGGCGAGTGGATCCCCCGGCTCGCCGATCCCACCCTGCTCTGGCTCGCCACCGCGCTGTGCGCCACGCTGGCGGGCAACC
TGACCATCGTCGGCTCGGTCGCGAACGTCATCGTCCTCGAGCTGGCCGGCGCGCGCGGCCGCATCGGCTTCTGGCGCTTC
TTCCGCGCGGGCGCGGTGATCACGGCCGCGACGGTGGCCGCCGGGCTCGGGATCCTGCTCCTGGAGCACCGGCTCGGGCT
GATCGGGTAG

Upstream 100 bases:

>100_bases
TCTGGCCGCCGCCCTCGCCGGCGCTGCCGTCCAGCACGATGGGGAGATCCGCCGGCATCGGCGCAATGTAGTCCGGCGAC
GCCGCGGCGTTAAGCGGTGC

Downstream 100 bases:

>100_bases
CCTTCAACTCGTTGGGATGACAGCGGCTTTTGACGCCTCCCGGGAAGCACCCCAGGCAGGGCGGGACGGAGCGTGAGATC
GGCCGCTCCGCCGAAATAGG

Product: Citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MGWAGRPLPGACYKARVIAAVAVFALTYVAVAAGRFPYLSVDRPAAALLGAVLMVALGVLTPAEGGAAVNGETLGLLLGM
MVLTAYLGEAGFFRWASWRVLRAAGTPRTLLWGVVFTAGALSALLVNDTVCLMMTPLVLRMVDDADLPPLPYLLAVAFGS
NAGSAATLTGNPQNMIVGTLSGIGYGRFAAALALPALASLLLVAALLHALFRRVLPRGALTGGRPAAPEVDRALLAKALG
ALAVAVAGFLLGLELAWTALFAAALCMAVAGRAPREALQRVDWPLLVFFAGLFVVVAGIGRAGVTERMYQAVAPLLGADP
ARQSAVFGLFSIAASQVVSNVPFVILAGEWIPRLADPTLLWLATALCATLAGNLTIVGSVANVIVLELAGARGRIGFWRF
FRAGAVITAATVAAGLGILLLEHRLGLIG

Sequences:

>Translated_429_residues
MGWAGRPLPGACYKARVIAAVAVFALTYVAVAAGRFPYLSVDRPAAALLGAVLMVALGVLTPAEGGAAVNGETLGLLLGM
MVLTAYLGEAGFFRWASWRVLRAAGTPRTLLWGVVFTAGALSALLVNDTVCLMMTPLVLRMVDDADLPPLPYLLAVAFGS
NAGSAATLTGNPQNMIVGTLSGIGYGRFAAALALPALASLLLVAALLHALFRRVLPRGALTGGRPAAPEVDRALLAKALG
ALAVAVAGFLLGLELAWTALFAAALCMAVAGRAPREALQRVDWPLLVFFAGLFVVVAGIGRAGVTERMYQAVAPLLGADP
ARQSAVFGLFSIAASQVVSNVPFVILAGEWIPRLADPTLLWLATALCATLAGNLTIVGSVANVIVLELAGARGRIGFWRF
FRAGAVITAATVAAGLGILLLEHRLGLIG
>Mature_428_residues
GWAGRPLPGACYKARVIAAVAVFALTYVAVAAGRFPYLSVDRPAAALLGAVLMVALGVLTPAEGGAAVNGETLGLLLGMM
VLTAYLGEAGFFRWASWRVLRAAGTPRTLLWGVVFTAGALSALLVNDTVCLMMTPLVLRMVDDADLPPLPYLLAVAFGSN
AGSAATLTGNPQNMIVGTLSGIGYGRFAAALALPALASLLLVAALLHALFRRVLPRGALTGGRPAAPEVDRALLAKALGA
LAVAVAGFLLGLELAWTALFAAALCMAVAGRAPREALQRVDWPLLVFFAGLFVVVAGIGRAGVTERMYQAVAPLLGADPA
RQSAVFGLFSIAASQVVSNVPFVILAGEWIPRLADPTLLWLATALCATLAGNLTIVGSVANVIVLELAGARGRIGFWRFF
RAGAVITAATVAAGLGILLLEHRLGLIG

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=454, Percent_Identity=27.0925110132159, Blast_Score=104, Evalue=2e-22,
Organism=Escherichia coli, GI1787039, Length=342, Percent_Identity=30.1169590643275, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082277, Length=398, Percent_Identity=24.3718592964824, Blast_Score=82, Evalue=5e-17,
Organism=Drosophila melanogaster, GI85724998, Length=465, Percent_Identity=25.5913978494624, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI62484377, Length=465, Percent_Identity=25.5913978494624, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI19920704, Length=230, Percent_Identity=30, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581759, Length=230, Percent_Identity=30, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574683, Length=230, Percent_Identity=30, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574681, Length=230, Percent_Identity=30, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574685, Length=230, Percent_Identity=30, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574678, Length=230, Percent_Identity=30, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24656008, Length=434, Percent_Identity=24.8847926267281, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 44107; Mature: 43976

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWAGRPLPGACYKARVIAAVAVFALTYVAVAAGRFPYLSVDRPAAALLGAVLMVALGVL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHC
TPAEGGAAVNGETLGLLLGMMVLTAYLGEAGFFRWASWRVLRAAGTPRTLLWGVVFTAGA
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCHHHHHHHHHHHHH
LSALLVNDTVCLMMTPLVLRMVDDADLPPLPYLLAVAFGSNAGSAATLTGNPQNMIVGTL
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCEEEECC
SGIGYGRFAAALALPALASLLLVAALLHALFRRVLPRGALTGGRPAAPEVDRALLAKALG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
ALAVAVAGFLLGLELAWTALFAAALCMAVAGRAPREALQRVDWPLLVFFAGLFVVVAGIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCC
RAGVTERMYQAVAPLLGADPARQSAVFGLFSIAASQVVSNVPFVILAGEWIPRLADPTLL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCHHHH
WLATALCATLAGNLTIVGSVANVIVLELAGARGRIGFWRFFRAGAVITAATVAAGLGILL
HHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
LEHRLGLIG
HHHHHCCCC
>Mature Secondary Structure 
GWAGRPLPGACYKARVIAAVAVFALTYVAVAAGRFPYLSVDRPAAALLGAVLMVALGVL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHC
TPAEGGAAVNGETLGLLLGMMVLTAYLGEAGFFRWASWRVLRAAGTPRTLLWGVVFTAGA
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCHHHHHHHHHHHHH
LSALLVNDTVCLMMTPLVLRMVDDADLPPLPYLLAVAFGSNAGSAATLTGNPQNMIVGTL
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCEEEECC
SGIGYGRFAAALALPALASLLLVAALLHALFRRVLPRGALTGGRPAAPEVDRALLAKALG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
ALAVAVAGFLLGLELAWTALFAAALCMAVAGRAPREALQRVDWPLLVFFAGLFVVVAGIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCC
RAGVTERMYQAVAPLLGADPARQSAVFGLFSIAASQVVSNVPFVILAGEWIPRLADPTLL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCHHHH
WLATALCATLAGNLTIVGSVANVIVLELAGARGRIGFWRFFRAGAVITAATVAAGLGILL
HHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
LEHRLGLIG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]