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The map label for this gene is ylbH [H]

Identifier: 220917304

GI number: 220917304

Start: 2445319

End: 2445858

Strand: Direct

Name: ylbH [H]

Synonym: A2cp1_2204

Alternate gene names: 220917304

Gene position: 2445319-2445858 (Clockwise)

Preceding gene: 220917303

Following gene: 220917305

Centisome position: 48.62

GC content: 77.41

Gene sequence:

>540_bases
GTGACGCGCATCATCGCCGGGACCGCGCGCGGCCGGCGGCTGGCCGTGCCGAAGGGGCAGGGGACGCGGCCCACCAGCGA
CAAGGTCCGCGGCGCGGTGTTCAACCTGCTCGGCCAGTTCTTCGAGGGCGGCGACGTGCTCGACCTCTACGCCGGCACCG
GCGCGCTGGCGCTCGAGGCGCTCTCGCGCGGCTGCGCGCGGGCCGTGTGCGTCGAGGCGGATCGCCCCACCGCGGAGCTG
CTGCGCCGGAACGCGGAGACCTGCGGCTGGACCGATCGCGTCGAAGTCGTCCGGGGCCGGGTGCCGGAGGCGCTGGCGCG
GCTCGCGCCGGGCCGCTTCGCGCTGGCGTTCGTCGATCCGCCCTACGCGGAGGGGCCGGACGCGGCGCTGGCGGCGCTGG
GCCCGCTGCTCGCGCCGGGGGGACGGGCGGTCGCCGAGCACGACGCCCGCCGGCCGCCCGTGGACCGGATCGGTCCACTC
TCGCTGGCGGATCGGCGCACGTACGGCGGCACGGGAATCTCGATCTACCAGCGCGACTGA

Upstream 100 bases:

>100_bases
TCTACGTCGAGGTGATGGACTTCCTGGAGCGGCTCGGCGCGGCGGGCAGCGCGCGCGGGCTGGCGCGGGCGCTGGAGGCG
CGGCTCACCGAGGGCGGCGC

Downstream 100 bases:

>100_bases
GCGATACTGCGCACCCCACATGAACCGCGCCGCCATCTACCCTGGCTCGTTCGATCCGCTCACCAACGGGCACCTCGCGA
TCATCCAGCGCGGGCTGAAC

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQFFEGGDVLDLYAGTGALALEALSRGCARAVCVEADRPTAEL
LRRNAETCGWTDRVEVVRGRVPEALARLAPGRFALAFVDPPYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPL
SLADRRTYGGTGISIYQRD

Sequences:

>Translated_179_residues
MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQFFEGGDVLDLYAGTGALALEALSRGCARAVCVEADRPTAEL
LRRNAETCGWTDRVEVVRGRVPEALARLAPGRFALAFVDPPYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPL
SLADRRTYGGTGISIYQRD
>Mature_178_residues
TRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQFFEGGDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELL
RRNAETCGWTDRVEVVRGRVPEALARLAPGRFALAFVDPPYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPLS
LADRRTYGGTGISIYQRD

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=123, Percent_Identity=41.4634146341463, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 18932; Mature: 18801

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQFFEGGDVLDLYAGTGALALEA
CCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
LSRGCARAVCVEADRPTAELLRRNAETCGWTDRVEVVRGRVPEALARLAPGRFALAFVDP
HHHHHHHEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEEECC
PYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPLSLADRRTYGGTGISIYQRD
CCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
TRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQFFEGGDVLDLYAGTGALALEA
CEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
LSRGCARAVCVEADRPTAELLRRNAETCGWTDRVEVVRGRVPEALARLAPGRFALAFVDP
HHHHHHHEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEEECC
PYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPLSLADRRTYGGTGISIYQRD
CCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]