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The map label for this gene is nadB [C]

Identifier: 220916965

GI number: 220916965

Start: 2083035

End: 2084582

Strand: Reverse

Name: nadB [C]

Synonym: A2cp1_1861

Alternate gene names: 220916965

Gene position: 2084582-2083035 (Counterclockwise)

Preceding gene: 220916966

Following gene: 220916964

Centisome position: 41.45

GC content: 70.09

Gene sequence:

>1548_bases
ATGAGCGACCAGCAGCAGAAGAGCGGAATCGGACGTCGCGCGATGCTCAAGGCCACGGCGGTGGCCGCGGGCACGGGCCT
CGCGCTCGACCTCTTCGGCGGGAAGGCCGAGGCAGCCGAGCCACGCGCGAAGCGGCCGCTGCCGAAGAAGTGGGACGAGA
CCTGGGACGTGGTGGTGGTGGGCTCCGGCTTCGCCGGCCTGGCCGCCGCGGCCGAGGCCGCCAAGGCCGGCGCCAAGGTG
ACGGTGCTCGAGAAGATGCCGGTGTACGGCGGCAACTCGATCATCAACGGCGGCGAGTACAACGCCTGGACCGACGAGCT
GCACCTGCGCGAGAAGCTGAAGCTCCCCGACGACTCGAAGGACCTCCACGGCAGCGACACGCTGAAGGGCGGCGACTACT
ACGGCGACCCGAAGCTGGTCGAGATCCTCTGCCGCGAGTCGCCGAAGGCGCTCGACTGGATGATCGACGAGGGCGGGCTG
CAGCTCCGCGAGATCCTGAACCGCACCGGCGGCCACACCGCCTACCGGACCCACACCTGCAAGGAGGGCGTCGGGCGCGG
CTACACCGAGGCCGAGCGCAAGATCGCCGAGAAGGCCGGCGTGAAGGTCCGCCTCAACCACGAGATCACCTGGATCTGGC
GCGCCGACGTGGACGGGCCGGTGCTGGGCGTGGAGGTGAAGGCCCGCGGGAAGAAGCTCCAGGTCAAGGTCAACCGCGGG
CTGGTGCTCGCGTCCGGCGGCTTCAGCCGCGACGTGAAGATGCGCATGGCGTTCAACCCGAGCCTGGTGGCGAGCTACAA
CTGCACCAACCACCCGGGCGCCACCGGCGAGACCATCCGCTTCGCGCAGGCCGTCGGCGCGGACACGCTGCACCTCGGGT
TCATCCAGCTCTACCCGTACGCCGAGCCGGACACCGGCATCCTCGACGCGCCGGCCGTCTACCCGTTCCGTGGCCCGGGC
TACGGCATCCTGTACGTGGACAAGAAGGGCAAGCGCTTCGTGAACGAGCTGGAGCGCCGTGACGTGGTCTCGCGCGCCGA
GATCAACACAGGCATGAAGCCGACCTACTCCATCTTCAACGCGAAGATGGCGCCGCTCATGGGCGGGACCAAGGAGGAGA
TCGACGCCGGCATCTCCAAGGGCCGCTTCGTGAAGGCCGACACCATCGACGAGCTGGCCGGGAAGCTCGGCCTGCCCGCC
GACACGCTCCGCGAGACGGTCGCCACGCACAACCGGTACATCCGGGAGAAGAAGGACCCGGACTTCGCCAAGCCCATCAC
CGACCGCATGCTGCCGCTCGAGGAGGGGCCGTTCTACGGGATCGCGCAGTGGCCCGCGGTGCACCACACCATGGGCGGCC
TGCGCATCGACGAGCAGGCGCGCGTGATCGACATCTGGGGCAACCCCATCCCGAAGTTCTTCGCCGCCGGCGAGGTCACC
GGCGGCATCCACGGCGCGAACCGCCTCGGCGGCAACGCCGGCCCGGACGCGGTCGTGTTCGGGCGCATCGCCGGCCGCAG
CGCGGCGGGCGCCAGCCCGGCCGCCTAG

Upstream 100 bases:

>100_bases
CCATTGCCGCCACCCCGCCCCGGTCGAACGCTGGCTCCCGCAACGCCGCGCCCAGACCGGAGCGCGGCTCATCCGCCCCC
CGGCGGAGAGGAGAAGCCAG

Downstream 100 bases:

>100_bases
GCCGGCCCGCGGACGCCCGGCGCCGGTCCCGCTCGCCGGCCCGGGCGCCCGCCCTTCCCTCACGGAGCCATCCATGAACG
CCCTCGTCGCGCTCGCCGCG

Product: flavocytochrome c

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSDQQQKSGIGRRAMLKATAVAAGTGLALDLFGGKAEAAEPRAKRPLPKKWDETWDVVVVGSGFAGLAAAAEAAKAGAKV
TVLEKMPVYGGNSIINGGEYNAWTDELHLREKLKLPDDSKDLHGSDTLKGGDYYGDPKLVEILCRESPKALDWMIDEGGL
QLREILNRTGGHTAYRTHTCKEGVGRGYTEAERKIAEKAGVKVRLNHEITWIWRADVDGPVLGVEVKARGKKLQVKVNRG
LVLASGGFSRDVKMRMAFNPSLVASYNCTNHPGATGETIRFAQAVGADTLHLGFIQLYPYAEPDTGILDAPAVYPFRGPG
YGILYVDKKGKRFVNELERRDVVSRAEINTGMKPTYSIFNAKMAPLMGGTKEEIDAGISKGRFVKADTIDELAGKLGLPA
DTLRETVATHNRYIREKKDPDFAKPITDRMLPLEEGPFYGIAQWPAVHHTMGGLRIDEQARVIDIWGNPIPKFFAAGEVT
GGIHGANRLGGNAGPDAVVFGRIAGRSAAGASPAA

Sequences:

>Translated_515_residues
MSDQQQKSGIGRRAMLKATAVAAGTGLALDLFGGKAEAAEPRAKRPLPKKWDETWDVVVVGSGFAGLAAAAEAAKAGAKV
TVLEKMPVYGGNSIINGGEYNAWTDELHLREKLKLPDDSKDLHGSDTLKGGDYYGDPKLVEILCRESPKALDWMIDEGGL
QLREILNRTGGHTAYRTHTCKEGVGRGYTEAERKIAEKAGVKVRLNHEITWIWRADVDGPVLGVEVKARGKKLQVKVNRG
LVLASGGFSRDVKMRMAFNPSLVASYNCTNHPGATGETIRFAQAVGADTLHLGFIQLYPYAEPDTGILDAPAVYPFRGPG
YGILYVDKKGKRFVNELERRDVVSRAEINTGMKPTYSIFNAKMAPLMGGTKEEIDAGISKGRFVKADTIDELAGKLGLPA
DTLRETVATHNRYIREKKDPDFAKPITDRMLPLEEGPFYGIAQWPAVHHTMGGLRIDEQARVIDIWGNPIPKFFAAGEVT
GGIHGANRLGGNAGPDAVVFGRIAGRSAAGASPAA
>Mature_514_residues
SDQQQKSGIGRRAMLKATAVAAGTGLALDLFGGKAEAAEPRAKRPLPKKWDETWDVVVVGSGFAGLAAAAEAAKAGAKVT
VLEKMPVYGGNSIINGGEYNAWTDELHLREKLKLPDDSKDLHGSDTLKGGDYYGDPKLVEILCRESPKALDWMIDEGGLQ
LREILNRTGGHTAYRTHTCKEGVGRGYTEAERKIAEKAGVKVRLNHEITWIWRADVDGPVLGVEVKARGKKLQVKVNRGL
VLASGGFSRDVKMRMAFNPSLVASYNCTNHPGATGETIRFAQAVGADTLHLGFIQLYPYAEPDTGILDAPAVYPFRGPGY
GILYVDKKGKRFVNELERRDVVSRAEINTGMKPTYSIFNAKMAPLMGGTKEEIDAGISKGRFVKADTIDELAGKLGLPAD
TLRETVATHNRYIREKKDPDFAKPITDRMLPLEEGPFYGIAQWPAVHHTMGGLRIDEQARVIDIWGNPIPKFFAAGEVTG
GIHGANRLGGNAGPDAVVFGRIAGRSAAGASPAA

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Escherichia coli, GI1788928, Length=496, Percent_Identity=27.0161290322581, Blast_Score=88, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71986328, Length=480, Percent_Identity=33.5416666666667, Blast_Score=188, Evalue=6e-48,
Organism=Saccharomyces cerevisiae, GI6320788, Length=481, Percent_Identity=32.8482328482328, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6322511, Length=491, Percent_Identity=31.3645621181263, Blast_Score=155, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 55556; Mature: 55425

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQQQKSGIGRRAMLKATAVAAGTGLALDLFGGKAEAAEPRAKRPLPKKWDETWDVVVV
CCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCEEEEEE
GSGFAGLAAAAEAAKAGAKVTVLEKMPVYGGNSIINGGEYNAWTDELHLREKLKLPDDSK
CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCC
DLHGSDTLKGGDYYGDPKLVEILCRESPKALDWMIDEGGLQLREILNRTGGHTAYRTHTC
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEECCHH
KEGVGRGYTEAERKIAEKAGVKVRLNHEITWIWRADVDGPVLGVEVKARGKKLQVKVNRG
HHHHCCCHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCCEEEEEEECCCCEEEEEEECC
LVLASGGFSRDVKMRMAFNPSLVASYNCTNHPGATGETIRFAQAVGADTLHLGFIQLYPY
EEEECCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEC
AEPDTGILDAPAVYPFRGPGYGILYVDKKGKRFVNELERRDVVSRAEINTGMKPTYSIFN
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
AKMAPLMGGTKEEIDAGISKGRFVKADTIDELAGKLGLPADTLRETVATHNRYIREKKDP
CHHHHHCCCCHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
DFAKPITDRMLPLEEGPFYGIAQWPAVHHTMGGLRIDEQARVIDIWGNPIPKFFAAGEVT
CHHCCHHHHCCCCCCCCCCCEECCCHHHHHCCCEEECCCCEEEEECCCCCHHHHCCCCCC
GGIHGANRLGGNAGPDAVVFGRIAGRSAAGASPAA
CCCCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SDQQQKSGIGRRAMLKATAVAAGTGLALDLFGGKAEAAEPRAKRPLPKKWDETWDVVVV
CCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCEEEEEE
GSGFAGLAAAAEAAKAGAKVTVLEKMPVYGGNSIINGGEYNAWTDELHLREKLKLPDDSK
CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCC
DLHGSDTLKGGDYYGDPKLVEILCRESPKALDWMIDEGGLQLREILNRTGGHTAYRTHTC
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEECCHH
KEGVGRGYTEAERKIAEKAGVKVRLNHEITWIWRADVDGPVLGVEVKARGKKLQVKVNRG
HHHHCCCHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCCEEEEEEECCCCEEEEEEECC
LVLASGGFSRDVKMRMAFNPSLVASYNCTNHPGATGETIRFAQAVGADTLHLGFIQLYPY
EEEECCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEC
AEPDTGILDAPAVYPFRGPGYGILYVDKKGKRFVNELERRDVVSRAEINTGMKPTYSIFN
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
AKMAPLMGGTKEEIDAGISKGRFVKADTIDELAGKLGLPADTLRETVATHNRYIREKKDP
CHHHHHCCCCHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
DFAKPITDRMLPLEEGPFYGIAQWPAVHHTMGGLRIDEQARVIDIWGNPIPKFFAAGEVT
CHHCCHHHHCCCCCCCCCCCEECCCHHHHHCCCEEECCCCEEEEECCCCCHHHHCCCCCC
GGIHGANRLGGNAGPDAVVFGRIAGRSAAGASPAA
CCCCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]