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The map label for this gene is rfbA [H]

Identifier: 220916599

GI number: 220916599

Start: 1668874

End: 1669725

Strand: Direct

Name: rfbA [H]

Synonym: A2cp1_1493

Alternate gene names: 220916599

Gene position: 1668874-1669725 (Clockwise)

Preceding gene: 220916598

Following gene: 220916600

Centisome position: 33.18

GC content: 73.83

Gene sequence:

>852_bases
GTGACCGCGCTCTCTCCCTCCGCCGGATCGACCCGGACCCCCGCGCCCCCGGACGCGCCCGCGCTGGCGGGCGCCGCCGC
CGACGTCTGGCGCTTCCGCGAGCTGCTCGCGCTGCTGGTGCTGCGCGACCTGAAGGTCCGCTACAAGCGCAGCGTCCTCG
GGATGGTCTGGACGCTGCTCAACCCGCTGCTCCAGATGGTCGTCTACACCCTGGTGTTCTCGACCATCCTGCGGATCGGC
GTCCCGGACTACCCGCTGTTCGTCCTGTGCGGCCTGCTCCCGTGGTCGCTGCTCGCGGTCGGGACCACCGGGGCGGCCAC
CGCGCTCGTCGGCAACCAGTCCCTCATCCGGAAGGTGGCGGTGCCGCAGGCGGTGTACCCGCTCGCGGTGGTGGGCTCGA
AGCTCGCCGACGCGCTGCTCTCGATCCCGGCGCTGGCGCTCCTCGCGCTCGCCACCGGCCGGCCGCCCGGCGCGAGCTGG
GCCTGGCTCCCGCTCGCGCTCGCCTGCGCGGCCGGCTTCACCGCCGGGCTGGCGCTGCTGCTCTCGTCGGCGACGGTGTT
CTTCCGCGACCTGCGCCACCTGGTGGAGCTCCTGTTCCAGGTCTGGTTCTACGTGACGCCGGTGTTCTACCCGGCGAGCT
TCCTCGAGCAGCTCCCGGTGCCCGCCCTGCGCGCCGTGCTCGCCGCGAACCCCGCGGCGCCCATCGTGCGGCTCTTCCAG
GAGAGCGTGTACGAGGGTCGCAGCCCGGCCGCCTCCACCGTCGCGTTCGCGCTGCTGGCCGCCCTCGTCTCGCTCGCGGT
CGGGGGCGCGGTGTTCACCCGCTGCGAGCACGGCCACATCCACCATCTCTGA

Upstream 100 bases:

>100_bases
CGCGCGGCCCGTCCTGCGGGCGGTGTCCTGAGCCGGGGCGCGCGACCGCGCGGGGCAGGCGGGTGCCCGGGCGAGCGATC
GACGCCTACGTTCCCTCGAC

Downstream 100 bases:

>100_bases
CATGACCGGGACCATCACCTTCGAGGACGTGGGGATGTGCTACCGCCTGCACCGGGAGCGGGTGCGCTCGCTCAAGGAGG
CGGTGCTGGGCGGCTTCCGG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTALSPSAGSTRTPAPPDAPALAGAAADVWRFRELLALLVLRDLKVRYKRSVLGMVWTLLNPLLQMVVYTLVFSTILRIG
VPDYPLFVLCGLLPWSLLAVGTTGAATALVGNQSLIRKVAVPQAVYPLAVVGSKLADALLSIPALALLALATGRPPGASW
AWLPLALACAAGFTAGLALLLSSATVFFRDLRHLVELLFQVWFYVTPVFYPASFLEQLPVPALRAVLAANPAAPIVRLFQ
ESVYEGRSPAASTVAFALLAALVSLAVGGAVFTRCEHGHIHHL

Sequences:

>Translated_283_residues
MTALSPSAGSTRTPAPPDAPALAGAAADVWRFRELLALLVLRDLKVRYKRSVLGMVWTLLNPLLQMVVYTLVFSTILRIG
VPDYPLFVLCGLLPWSLLAVGTTGAATALVGNQSLIRKVAVPQAVYPLAVVGSKLADALLSIPALALLALATGRPPGASW
AWLPLALACAAGFTAGLALLLSSATVFFRDLRHLVELLFQVWFYVTPVFYPASFLEQLPVPALRAVLAANPAAPIVRLFQ
ESVYEGRSPAASTVAFALLAALVSLAVGGAVFTRCEHGHIHHL
>Mature_282_residues
TALSPSAGSTRTPAPPDAPALAGAAADVWRFRELLALLVLRDLKVRYKRSVLGMVWTLLNPLLQMVVYTLVFSTILRIGV
PDYPLFVLCGLLPWSLLAVGTTGAATALVGNQSLIRKVAVPQAVYPLAVVGSKLADALLSIPALALLALATGRPPGASWA
WLPLALACAAGFTAGLALLLSSATVFFRDLRHLVELLFQVWFYVTPVFYPASFLEQLPVPALRAVLAANPAAPIVRLFQE
SVYEGRSPAASTVAFALLAALVSLAVGGAVFTRCEHGHIHHL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29993; Mature: 29862

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSPSAGSTRTPAPPDAPALAGAAADVWRFRELLALLVLRDLKVRYKRSVLGMVWTLL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPLLQMVVYTLVFSTILRIGVPDYPLFVLCGLLPWSLLAVGTTGAATALVGNQSLIRKVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHH
VPQAVYPLAVVGSKLADALLSIPALALLALATGRPPGASWAWLPLALACAAGFTAGLALL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSSATVFFRDLRHLVELLFQVWFYVTPVFYPASFLEQLPVPALRAVLAANPAAPIVRLFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
ESVYEGRSPAASTVAFALLAALVSLAVGGAVFTRCEHGHIHHL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TALSPSAGSTRTPAPPDAPALAGAAADVWRFRELLALLVLRDLKVRYKRSVLGMVWTLL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPLLQMVVYTLVFSTILRIGVPDYPLFVLCGLLPWSLLAVGTTGAATALVGNQSLIRKVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHH
VPQAVYPLAVVGSKLADALLSIPALALLALATGRPPGASWAWLPLALACAAGFTAGLALL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSSATVFFRDLRHLVELLFQVWFYVTPVFYPASFLEQLPVPALRAVLAANPAAPIVRLFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
ESVYEGRSPAASTVAFALLAALVSLAVGGAVFTRCEHGHIHHL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]