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The map label for this gene is rbfA

Identifier: 220916338

GI number: 220916338

Start: 1383550

End: 1383969

Strand: Direct

Name: rbfA

Synonym: A2cp1_1232

Alternate gene names: 220916338

Gene position: 1383550-1383969 (Clockwise)

Preceding gene: 220916337

Following gene: 220916339

Centisome position: 27.51

GC content: 74.52

Gene sequence:

>420_bases
GTGACCACCCACAACCGCCCCGCCCGCGTGGCCGAGGAGTTCCGGCACGAGCTCTCCGCGATCCTGGCGCGTGGCCTGAA
GGACCCGCGCATCACCGGGTTCGTGACCGTGACCGGGTCGAAGATGTCGCCCGACCTGAAGGAGGCCACGGTGTACGTGT
CCATCCACGGCGACGAGCGCGTGCGCAAGGACACCTTCGCCGGGCTGCAGGCGGCCGCCGGCTTCCTGCAGCGCGAGGTG
TCGCGGGCGCTGCGGCTGCGCAACACCCCGCACCTGCGCTTCGTGTACGACGAGTCGGTCGCGCGCGGCGACCGCATCGA
GCGGCTGCTGCGCGAGGCGCGCACGCAGGGGCAGGCGGCGCCGGCCCCGGACGTCGAGCCCGCCCCGGGCGCGGCGCCGG
ACGACGAGGCAGAGGAGTAG

Upstream 100 bases:

>100_bases
GGGGCGACGAGGACGCCCGCGAGCAGGAGCCGCGCTTCCCGAGGCCGCGGCCGCGGCCGCGCGAGGACGACGAGCACCAG
GACGAGGGAGACGACGAGCC

Downstream 100 bases:

>100_bases
CCGCCGCGTGCGCCCGGGCGTGCTCGTGGTGGACAAGCCCGCCGGCCCCACCAGCTTCGAGGTGGTGCGCCGGATCCGGC
GCGCGCTCGGCGCGGCGCGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MTTHNRPARVAEEFRHELSAILARGLKDPRITGFVTVTGSKMSPDLKEATVYVSIHGDERVRKDTFAGLQAAAGFLQREV
SRALRLRNTPHLRFVYDESVARGDRIERLLREARTQGQAAPAPDVEPAPGAAPDDEAEE

Sequences:

>Translated_139_residues
MTTHNRPARVAEEFRHELSAILARGLKDPRITGFVTVTGSKMSPDLKEATVYVSIHGDERVRKDTFAGLQAAAGFLQREV
SRALRLRNTPHLRFVYDESVARGDRIERLLREARTQGQAAPAPDVEPAPGAAPDDEAEE
>Mature_138_residues
TTHNRPARVAEEFRHELSAILARGLKDPRITGFVTVTGSKMSPDLKEATVYVSIHGDERVRKDTFAGLQAAAGFLQREVS
RALRLRNTPHLRFVYDESVARGDRIERLLREARTQGQAAPAPDVEPAPGAAPDDEAEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=107, Percent_Identity=42.9906542056075, Blast_Score=86, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_ANAD2 (B8JFY8)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002491642.1
- ProteinModelPortal:   B8JFY8
- SMR:   B8JFY8
- GeneID:   7299098
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_1232
- HOGENOM:   HBG751055
- ProtClustDB:   CLSK945448
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15373; Mature: 15242

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHNRPARVAEEFRHELSAILARGLKDPRITGFVTVTGSKMSPDLKEATVYVSIHGDER
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCHH
VRKDTFAGLQAAAGFLQREVSRALRLRNTPHLRFVYDESVARGDRIERLLREARTQGQAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCC
PAPDVEPAPGAAPDDEAEE
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTHNRPARVAEEFRHELSAILARGLKDPRITGFVTVTGSKMSPDLKEATVYVSIHGDER
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCHH
VRKDTFAGLQAAAGFLQREVSRALRLRNTPHLRFVYDESVARGDRIERLLREARTQGQAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCC
PAPDVEPAPGAAPDDEAEE
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA