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The map label for this gene is cmoB [H]

Identifier: 220916040

GI number: 220916040

Start: 1046348

End: 1047109

Strand: Direct

Name: cmoB [H]

Synonym: A2cp1_0927

Alternate gene names: 220916040

Gene position: 1046348-1047109 (Clockwise)

Preceding gene: 220916039

Following gene: 220916041

Centisome position: 20.8

GC content: 72.7

Gene sequence:

>762_bases
ATGACGCGAGCGGAGCTCGAGGCGCGCGTGCGCGCGCTCTCGCCGTGGTTCCACAACCTCGAGCTGAACGGCGTGCGCAC
CGCGCCGGACCACTTCCTCGGCGACTACCCGGGCCTGGTCTGGAGGGCGATCGCGCCGGCGCTCCCGCAGGACCTCTCGG
GCAAGAGCGTGCTCGACGTGGGCTGCAACGCCGGCTTCTTCTCGCTCGAGATGAAGCGGCGGGGCGCCGACCGCGTGCTG
GGCGTGGACTTCGATCCGCGCTACCTGGCCCAGGCACGCCTCGCCGCCGAGGTGTCCGGGCTCGAGATCGAGTTCCGCGA
GCTGTCGGTCTACGACGTCGCGGGGCTCGGCGAGCGCTTCGACGTGGTGCTGTTCATGGGCGTGCTCTACCACCTGCGGC
ACCCGCTGCTCGCGCTCGACCTCCTGCGGGCCCACGCGGTCGGCGACCTGCTCGTGTTCCAGAGCATGCTGCGCGGGTCG
AACGGCCGGTTCCCGGCGGAGGCCGACTATCCGTTCGAGGAGCGCGAGGTGTTCGATCACCCCGCCTGGCCCAAGCTGCA
CTTCGTGGAGCGGCGCTACGCGCACGACGAGACCAACTGGTGGATCCCGAACCGCGCCTGCGCCGAGGCGATGCTCCGCT
CGGCCGGCTTCGCGCCCGAGCCCGTGCCGGGCACCGAGGTGTACCTGTGCCGCCTGGCGGAGCCGGAGGCCTTCGGCGGC
CCGGTGTACCCGGCGCGGCCGCGCGACGGAGGTGCGCCGTGA

Upstream 100 bases:

>100_bases
GGGACGCTGGACGGGTACCGGCAGGCGCTGCGGCTGCTCCGCGAGGGGCCGCAGCCCGAGCCGGAGGACGCCGGCGCGGC
GCCGGGGATCGGGTGAGCGG

Downstream 100 bases:

>100_bases
TCGAGGCGGTGATGCTCTGGAACGAGCCGAACAACCTGTCGCACTGGGACTTCGACGCGGACCCGGGCTGGCGCCGCTTC
TCGGAGATGGTGCGCCTCGC

Product: type 11 methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTRAELEARVRALSPWFHNLELNGVRTAPDHFLGDYPGLVWRAIAPALPQDLSGKSVLDVGCNAGFFSLEMKRRGADRVL
GVDFDPRYLAQARLAAEVSGLEIEFRELSVYDVAGLGERFDVVLFMGVLYHLRHPLLALDLLRAHAVGDLLVFQSMLRGS
NGRFPAEADYPFEEREVFDHPAWPKLHFVERRYAHDETNWWIPNRACAEAMLRSAGFAPEPVPGTEVYLCRLAEPEAFGG
PVYPARPRDGGAP

Sequences:

>Translated_253_residues
MTRAELEARVRALSPWFHNLELNGVRTAPDHFLGDYPGLVWRAIAPALPQDLSGKSVLDVGCNAGFFSLEMKRRGADRVL
GVDFDPRYLAQARLAAEVSGLEIEFRELSVYDVAGLGERFDVVLFMGVLYHLRHPLLALDLLRAHAVGDLLVFQSMLRGS
NGRFPAEADYPFEEREVFDHPAWPKLHFVERRYAHDETNWWIPNRACAEAMLRSAGFAPEPVPGTEVYLCRLAEPEAFGG
PVYPARPRDGGAP
>Mature_252_residues
TRAELEARVRALSPWFHNLELNGVRTAPDHFLGDYPGLVWRAIAPALPQDLSGKSVLDVGCNAGFFSLEMKRRGADRVLG
VDFDPRYLAQARLAAEVSGLEIEFRELSVYDVAGLGERFDVVLFMGVLYHLRHPLLALDLLRAHAVGDLLVFQSMLRGSN
GRFPAEADYPFEEREVFDHPAWPKLHFVERRYAHDETNWWIPNRACAEAMLRSAGFAPEPVPGTEVYLCRLAEPEAFGGP
VYPARPRDGGAP

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 28327; Mature: 28195

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAELEARVRALSPWFHNLELNGVRTAPDHFLGDYPGLVWRAIAPALPQDLSGKSVLDV
CCHHHHHHHHHHHCHHHHCEEECCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEE
GCNAGFFSLEMKRRGADRVLGVDFDPRYLAQARLAAEVSGLEIEFRELSVYDVAGLGERF
CCCCCEEEEEHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEHHCCCCCHH
DVVLFMGVLYHLRHPLLALDLLRAHAVGDLLVFQSMLRGSNGRFPAEADYPFEEREVFDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCC
PAWPKLHFVERRYAHDETNWWIPNRACAEAMLRSAGFAPEPVPGTEVYLCRLAEPEAFGG
CCCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
PVYPARPRDGGAP
CCCCCCCCCCCCC
>Mature Secondary Structure 
TRAELEARVRALSPWFHNLELNGVRTAPDHFLGDYPGLVWRAIAPALPQDLSGKSVLDV
CHHHHHHHHHHHCHHHHCEEECCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEE
GCNAGFFSLEMKRRGADRVLGVDFDPRYLAQARLAAEVSGLEIEFRELSVYDVAGLGERF
CCCCCEEEEEHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEHHCCCCCHH
DVVLFMGVLYHLRHPLLALDLLRAHAVGDLLVFQSMLRGSNGRFPAEADYPFEEREVFDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCC
PAWPKLHFVERRYAHDETNWWIPNRACAEAMLRSAGFAPEPVPGTEVYLCRLAEPEAFGG
CCCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
PVYPARPRDGGAP
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA