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The map label for this gene is yckA [H]

Identifier: 220914864

GI number: 220914864

Start: 238573

End: 239409

Strand: Reverse

Name: yckA [H]

Synonym: Mnod_8010

Alternate gene names: 220914864

Gene position: 239409-238573 (Counterclockwise)

Preceding gene: 220914865

Following gene: 220914863

Centisome position: 52.26

GC content: 61.65

Gene sequence:

>837_bases
ATGAGACAGCCGGCATTTCAGCTGAACATGGCGCGTCTCCGGGAAGGGCAGTTTCTGAGAGGCCTCCGGGCGGGACACGT
CATCCTCTTGCTCCTGGCCCTGGGGGTTTCCCTTGCCTTTGCGGTGAGCCGTTCGTTCGTGCTCGGCTCTGGGCCCACGG
CGCTGACCACTCTCCTCGAATGGTCCCCATTCATTCTGCAGGGCTTTGCCTTGAACTTGGCCATGAGCTTTCTCGCGATG
GCGATGGCCACAATCCTCGGGACAGGCCTCGGTCTGCTGCAGATCAGCACGATTTCGGCCGTCCGGCTGCCCGCGCGGTT
CGTCACACATCTGTTGCGCAACTCGCCGTGGCTGGTGATCCTGTTCTTGGTGACGTACTTCATGCCCGTCGAGATTCGTC
TGCCGCACGGGTTGAGGGTTCCGGTTCCCGACTGGAGCAAGGCCACCCTGGCTTTCGCGTTGCCGGTCATGGGAAACATC
AGCGAGATCCTGCGCGGCGCAGTCCGATCGATCCCGTCGGGGCAATGGGAATCGGCCGAAGGGCTCGCGTTCACCCGGGC
TCAGACCTTGCGGTACATCATCCTGCCGCAGTGCGTCCGTCGCTGCATCCCTCCGTGGATGAACTGGTACGCGATGCTGA
CGCTGTCGACGCCGATGGCTTCGATCTTCAGCGTGCACGAGGCGGTCGCCAACGCTCAAGCAGGCATGGAGGCTGCCGGC
TCGCGCCCGGAGCTGTTGCTGCCGTTTTACTTGTTCCTGCTGTGCTTATTTTTCCTCTACATCTACCCGATTGCTCTTTG
GACTCGTAGGCTGGAGCGCAGATATGTCGTTGGCTGA

Upstream 100 bases:

>100_bases
TGATGCTGGTGCTGTTCGGATTTTACATTGTCGTCGTCACGCTCCTGGCGGCCGGCCTGCACGCGATCGAACGCAAGCTC
GTTCTTCCAGGATACGGCCA

Downstream 100 bases:

>100_bases
TCGATCCGCTGCTGAGGAAAGCCAGACCTGCCTGGGTCATCGCGCGATCGTCTCACTGCGCAACGTTCACAAATCGTACG
GCGCCTTCGAAGTGCTGAAA

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRQPAFQLNMARLREGQFLRGLRAGHVILLLLALGVSLAFAVSRSFVLGSGPTALTTLLEWSPFILQGFALNLAMSFLAM
AMATILGTGLGLLQISTISAVRLPARFVTHLLRNSPWLVILFLVTYFMPVEIRLPHGLRVPVPDWSKATLAFALPVMGNI
SEILRGAVRSIPSGQWESAEGLAFTRAQTLRYIILPQCVRRCIPPWMNWYAMLTLSTPMASIFSVHEAVANAQAGMEAAG
SRPELLLPFYLFLLCLFFLYIYPIALWTRRLERRYVVG

Sequences:

>Translated_278_residues
MRQPAFQLNMARLREGQFLRGLRAGHVILLLLALGVSLAFAVSRSFVLGSGPTALTTLLEWSPFILQGFALNLAMSFLAM
AMATILGTGLGLLQISTISAVRLPARFVTHLLRNSPWLVILFLVTYFMPVEIRLPHGLRVPVPDWSKATLAFALPVMGNI
SEILRGAVRSIPSGQWESAEGLAFTRAQTLRYIILPQCVRRCIPPWMNWYAMLTLSTPMASIFSVHEAVANAQAGMEAAG
SRPELLLPFYLFLLCLFFLYIYPIALWTRRLERRYVVG
>Mature_278_residues
MRQPAFQLNMARLREGQFLRGLRAGHVILLLLALGVSLAFAVSRSFVLGSGPTALTTLLEWSPFILQGFALNLAMSFLAM
AMATILGTGLGLLQISTISAVRLPARFVTHLLRNSPWLVILFLVTYFMPVEIRLPHGLRVPVPDWSKATLAFALPVMGNI
SEILRGAVRSIPSGQWESAEGLAFTRAQTLRYIILPQCVRRCIPPWMNWYAMLTLSTPMASIFSVHEAVANAQAGMEAAG
SRPELLLPFYLFLLCLFFLYIYPIALWTRRLERRYVVG

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=172, Percent_Identity=34.3023255813954, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786873, Length=223, Percent_Identity=25.5605381165919, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788646, Length=231, Percent_Identity=26.8398268398268, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082239, Length=219, Percent_Identity=24.6575342465753, Blast_Score=61, Evalue=1e-10,
Organism=Escherichia coli, GI1786874, Length=204, Percent_Identity=26.9607843137255, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30993; Mature: 30993

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPAFQLNMARLREGQFLRGLRAGHVILLLLALGVSLAFAVSRSFVLGSGPTALTTLLE
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHH
WSPFILQGFALNLAMSFLAMAMATILGTGLGLLQISTISAVRLPARFVTHLLRNSPWLVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LFLVTYFMPVEIRLPHGLRVPVPDWSKATLAFALPVMGNISEILRGAVRSIPSGQWESAE
HHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
GLAFTRAQTLRYIILPQCVRRCIPPWMNWYAMLTLSTPMASIFSVHEAVANAQAGMEAAG
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
SRPELLLPFYLFLLCLFFLYIYPIALWTRRLERRYVVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRQPAFQLNMARLREGQFLRGLRAGHVILLLLALGVSLAFAVSRSFVLGSGPTALTTLLE
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHH
WSPFILQGFALNLAMSFLAMAMATILGTGLGLLQISTISAVRLPARFVTHLLRNSPWLVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LFLVTYFMPVEIRLPHGLRVPVPDWSKATLAFALPVMGNISEILRGAVRSIPSGQWESAE
HHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
GLAFTRAQTLRYIILPQCVRRCIPPWMNWYAMLTLSTPMASIFSVHEAVANAQAGMEAAG
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
SRPELLLPFYLFLLCLFFLYIYPIALWTRRLERRYVVG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]