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The map label for this gene is dgoD [H]

Identifier: 220914860

GI number: 220914860

Start: 233386

End: 234546

Strand: Reverse

Name: dgoD [H]

Synonym: Mnod_8006

Alternate gene names: 220914860

Gene position: 234546-233386 (Counterclockwise)

Preceding gene: 220914861

Following gene: 220914855

Centisome position: 51.2

GC content: 65.46

Gene sequence:

>1161_bases
ATGAGAGTGAAGCAGGTTCGGATCTACGTGGTCGAGAGCGGCGGCATCAGGCCGGTCATCCTCGAGATGACGACCGACGA
CGGTACAGTGGGACTGGGCGAGGCGGCGGTTGCCTACGGTCTCGGTGGAACGGCGGCGGCCGCCATGATCAGGGAGCTCT
GCGAGCGCTGCGTCATCGGCCGGGACCCGTTCCGGGTCGAGGCCATCTGGACGGAGATGTACGACTGTTCCTTCTGGGCG
AAGGGCGGCGGTCCGATCGTGTTCGGCGCGATGAGCGCGATCGAGCAGGCCCTGGTGGACATCAAAGCGAGGGCGCTTCG
CGTTCCTGCCTACGAGTTGCTCGGCGGGCGCGTTCACGATGCGTTGCGGACCTACGCGAATGGCTGGTACTTCGGCTGCG
CGGATCTGGCCGATCTGCCGCGTTTCGCCGAGGCGACCGTGGCGGATGGGTACGATGCGCTGAAGCTCTACCCCTTCGCC
ACGATCCTCGAGACCGGCAGGTTGCGGCACCCATCACGCCGCGGGACGTCCGACGGTGACGTGCGCCGGCGGGCCGTCGC
AGCCGTCGCCAGCGTGCGGGCCGCCCTCGGACCCGGGCCCAAGATCATGCTGGACTTGAGTGGCGGTCTCACCCCTGACG
AGACGATTCGCTTCTGCCGCGAGGTCGAGGAATTCGACATCACCTACGTCGAGGAGCCCGCAGACCCGTTCGACCCGCAT
GCCTTGAGCAAGATCGCCAGCGGCATCTCCCAACCGATCGCGGTCGGCGAACGCATCTACACGCGCTATGGCTTTCGGGA
CCTGCTCGCCGGGAGAGCCGTCGATATCCTGCAGCCGGACCTCGGCAATACGGGCGGCATTCTCGAGGGCCGCAAGATCG
CCGCGATGGCGGAAGCATATGGTGTGAAGGTCCAGCCGCATGTCTGTGCGAGCGCCCTCTCCACGGTGATCGCGATGCAT
TTCAGCGCCGCCACGCCCAACTTCTACATGCAAGAGCATTTCCCCTACTGGGATCGCATCCCGGGCTACACCCAGGTGCT
GGAGGACCCGATCGAGCCGCAGGTCAAGGCTGGGACGATTCCGGTGTTGGATGCGATCGGGTACGGCGTAACGCTCCGCA
ACAGGAGCCTGCTCGATTGCCTTTGGACTGAGTGTCGATAG

Upstream 100 bases:

>100_bases
TTGCGCATGGAGCTGCACCGGGTCGGCGACGCCGTCGCCAGCCGAAACGTGCACGCGGCGGTGCTCGACGCTCTGCGTCT
CTGCAAGGATCTCTGACGGC

Downstream 100 bases:

>100_bases
GGTTCGATGAGCCCTCTCATTGCAGGCATCTATCAGATTAACAGCCTCGCATCGTGCGGGTATTATCCTTTCTAACAAGC
TATAATCCTGGATTGAATGC

Product: Mandelate racemase/muconate lactonizing protein

Products: NA

Alternate protein names: GalD [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MRVKQVRIYVVESGGIRPVILEMTTDDGTVGLGEAAVAYGLGGTAAAAMIRELCERCVIGRDPFRVEAIWTEMYDCSFWA
KGGGPIVFGAMSAIEQALVDIKARALRVPAYELLGGRVHDALRTYANGWYFGCADLADLPRFAEATVADGYDALKLYPFA
TILETGRLRHPSRRGTSDGDVRRRAVAAVASVRAALGPGPKIMLDLSGGLTPDETIRFCREVEEFDITYVEEPADPFDPH
ALSKIASGISQPIAVGERIYTRYGFRDLLAGRAVDILQPDLGNTGGILEGRKIAAMAEAYGVKVQPHVCASALSTVIAMH
FSAATPNFYMQEHFPYWDRIPGYTQVLEDPIEPQVKAGTIPVLDAIGYGVTLRNRSLLDCLWTECR

Sequences:

>Translated_386_residues
MRVKQVRIYVVESGGIRPVILEMTTDDGTVGLGEAAVAYGLGGTAAAAMIRELCERCVIGRDPFRVEAIWTEMYDCSFWA
KGGGPIVFGAMSAIEQALVDIKARALRVPAYELLGGRVHDALRTYANGWYFGCADLADLPRFAEATVADGYDALKLYPFA
TILETGRLRHPSRRGTSDGDVRRRAVAAVASVRAALGPGPKIMLDLSGGLTPDETIRFCREVEEFDITYVEEPADPFDPH
ALSKIASGISQPIAVGERIYTRYGFRDLLAGRAVDILQPDLGNTGGILEGRKIAAMAEAYGVKVQPHVCASALSTVIAMH
FSAATPNFYMQEHFPYWDRIPGYTQVLEDPIEPQVKAGTIPVLDAIGYGVTLRNRSLLDCLWTECR
>Mature_386_residues
MRVKQVRIYVVESGGIRPVILEMTTDDGTVGLGEAAVAYGLGGTAAAAMIRELCERCVIGRDPFRVEAIWTEMYDCSFWA
KGGGPIVFGAMSAIEQALVDIKARALRVPAYELLGGRVHDALRTYANGWYFGCADLADLPRFAEATVADGYDALKLYPFA
TILETGRLRHPSRRGTSDGDVRRRAVAAVASVRAALGPGPKIMLDLSGGLTPDETIRFCREVEEFDITYVEEPADPFDPH
ALSKIASGISQPIAVGERIYTRYGFRDLLAGRAVDILQPDLGNTGGILEGRKIAAMAEAYGVKVQPHVCASALSTVIAMH
FSAATPNFYMQEHFPYWDRIPGYTQVLEDPIEPQVKAGTIPVLDAIGYGVTLRNRSLLDCLWTECR

Specific function: Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=334, Percent_Identity=32.9341317365269, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787864, Length=363, Percent_Identity=28.099173553719, Blast_Score=131, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.6 [H]

Molecular weight: Translated: 42052; Mature: 42052

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKQVRIYVVESGGIRPVILEMTTDDGTVGLGEAAVAYGLGGTAAAAMIRELCERCVIG
CCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCC
RDPFRVEAIWTEMYDCSFWAKGGGPIVFGAMSAIEQALVDIKARALRVPAYELLGGRVHD
CCCCEEEEEEHHHHCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHH
ALRTYANGWYFGCADLADLPRFAEATVADGYDALKLYPFATILETGRLRHPSRRGTSDGD
HHHHHCCCEEEECCCHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
VRRRAVAAVASVRAALGPGPKIMLDLSGGLTPDETIRFCREVEEFDITYVEEPADPFDPH
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHH
ALSKIASGISQPIAVGERIYTRYGFRDLLAGRAVDILQPDLGNTGGILEGRKIAAMAEAY
HHHHHHHHHCCHHHHHHHHHHHHCHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH
GVKVQPHVCASALSTVIAMHFSAATPNFYMQEHFPYWDRIPGYTQVLEDPIEPQVKAGTI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHCCCCHHHHHCCCCCCCCCCCCC
PVLDAIGYGVTLRNRSLLDCLWTECR
HHHHHCCCCEEECCCHHHHHHHHCCC
>Mature Secondary Structure
MRVKQVRIYVVESGGIRPVILEMTTDDGTVGLGEAAVAYGLGGTAAAAMIRELCERCVIG
CCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCC
RDPFRVEAIWTEMYDCSFWAKGGGPIVFGAMSAIEQALVDIKARALRVPAYELLGGRVHD
CCCCEEEEEEHHHHCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHH
ALRTYANGWYFGCADLADLPRFAEATVADGYDALKLYPFATILETGRLRHPSRRGTSDGD
HHHHHCCCEEEECCCHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
VRRRAVAAVASVRAALGPGPKIMLDLSGGLTPDETIRFCREVEEFDITYVEEPADPFDPH
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHH
ALSKIASGISQPIAVGERIYTRYGFRDLLAGRAVDILQPDLGNTGGILEGRKIAAMAEAY
HHHHHHHHHCCHHHHHHHHHHHHCHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH
GVKVQPHVCASALSTVIAMHFSAATPNFYMQEHFPYWDRIPGYTQVLEDPIEPQVKAGTI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHCCCCHHHHHCCCCCCCCCCCCC
PVLDAIGYGVTLRNRSLLDCLWTECR
HHHHHCCCCEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA