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The map label for this gene is ycdL [C]

Identifier: 220914816

GI number: 220914816

Start: 177279

End: 177962

Strand: Reverse

Name: ycdL [C]

Synonym: Mnod_7953

Alternate gene names: 220914816

Gene position: 177962-177279 (Counterclockwise)

Preceding gene: 220914817

Following gene: 220914815

Centisome position: 38.85

GC content: 69.15

Gene sequence:

>684_bases
ATGGACCGCAAGCCGTGGGACGGCCTGATCTCCGAGGAGGAGCAGCGGGCCTACAACGCCGCCGGGTTCGGCCGTGCGAC
CGGCCTCGGGCGCCGGCCGGCCCTCCTCATCATCGACGTGCAGTACCGCACGACCGGGACGACGCCGATGCCGTTCTGGG
AGGCGATCAAGGAATATCCCACCGCGTGCGGCGACGTCGCCTGGGCGGCGGTGGAGCGGATCGAGCGGCTGCTCGGATTG
TTCCGCGAGCGCGGCTGGCCCGTCCTCTACCCGCTCGTCGCGCCCAAGGCGGCCTTCGACCGGGGACGCCTGTCCGACAA
GGTGCCGGCGATCATGACCGTCGCCGCGAAAGGCTACGAATTCCCCCCCGAGATCGCGCCGCGCGAGGGCGACATCCTGC
TGCCGAAGAAGCATCCGAGCGCCTTCTTCGGCACGCCGCTCACGAGCTACCTCATCAATCTCCAGGCCGACAGCCTCGTG
GTGACGGGCTGCTCCACGAGCGGATGCGTGCGCGGGAGCGTCGTCGATGCCTTCGCGTACAACTTCCGGGTCCTGGTGCC
CCACGATGCCGTCTACGACCGCAGCGCCACCTCGCACGCGGTCAACCTGTTCGACATGGCCTCGAAATACGCGGACGTGA
TGTCGACGGACGAGGCCCTGGAAGCCCTGCGCGCGCTGGTCTGA

Upstream 100 bases:

>100_bases
CCGACCGGCTCGCCTCATTCGAGGAGCGTCAGCGGGCGGTCGCCAAGGATGAATGGGACGCGCTCGAAGCCCGCTACCGG
GCAGCCTGAGGAGGCCGGGG

Downstream 100 bases:

>100_bases
CGACCGCCGCCCGAGAGAACCCCTGCGGCGCGGCTTCGCCGCCGGGAAGCGACACCGCCAGAGAGAGAGAGCGACCATGA
GACAGAGCGCGCCATCCGTC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: N-carbamoylsarcosine amidohydrolase; CSHase [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDRKPWDGLISEEEQRAYNAAGFGRATGLGRRPALLIIDVQYRTTGTTPMPFWEAIKEYPTACGDVAWAAVERIERLLGL
FRERGWPVLYPLVAPKAAFDRGRLSDKVPAIMTVAAKGYEFPPEIAPREGDILLPKKHPSAFFGTPLTSYLINLQADSLV
VTGCSTSGCVRGSVVDAFAYNFRVLVPHDAVYDRSATSHAVNLFDMASKYADVMSTDEALEALRALV

Sequences:

>Translated_227_residues
MDRKPWDGLISEEEQRAYNAAGFGRATGLGRRPALLIIDVQYRTTGTTPMPFWEAIKEYPTACGDVAWAAVERIERLLGL
FRERGWPVLYPLVAPKAAFDRGRLSDKVPAIMTVAAKGYEFPPEIAPREGDILLPKKHPSAFFGTPLTSYLINLQADSLV
VTGCSTSGCVRGSVVDAFAYNFRVLVPHDAVYDRSATSHAVNLFDMASKYADVMSTDEALEALRALV
>Mature_227_residues
MDRKPWDGLISEEEQRAYNAAGFGRATGLGRRPALLIIDVQYRTTGTTPMPFWEAIKEYPTACGDVAWAAVERIERLLGL
FRERGWPVLYPLVAPKAAFDRGRLSDKVPAIMTVAAKGYEFPPEIAPREGDILLPKKHPSAFFGTPLTSYLINLQADSLV
VTGCSTSGCVRGSVVDAFAYNFRVLVPHDAVYDRSATSHAVNLFDMASKYADVMSTDEALEALRALV

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: =3.5.1.59 [H]

Molecular weight: Translated: 24958; Mature: 24958

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKPWDGLISEEEQRAYNAAGFGRATGLGRRPALLIIDVQYRTTGTTPMPFWEAIKEYP
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHCC
TACGDVAWAAVERIERLLGLFRERGWPVLYPLVAPKAAFDRGRLSDKVPAIMTVAAKGYE
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCCHHEEEECCCCC
FPPEIAPREGDILLPKKHPSAFFGTPLTSYLINLQADSLVVTGCSTSGCVRGSVVDAFAY
CCCCCCCCCCCEECCCCCCCCHHCCCHHHHHEECCCCCEEEECCCCCCCCCCHHHHHHHH
NFRVLVPHDAVYDRSATSHAVNLFDMASKYADVMSTDEALEALRALV
CCEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
>Mature Secondary Structure
MDRKPWDGLISEEEQRAYNAAGFGRATGLGRRPALLIIDVQYRTTGTTPMPFWEAIKEYP
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHCC
TACGDVAWAAVERIERLLGLFRERGWPVLYPLVAPKAAFDRGRLSDKVPAIMTVAAKGYE
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCCHHEEEECCCCC
FPPEIAPREGDILLPKKHPSAFFGTPLTSYLINLQADSLVVTGCSTSGCVRGSVVDAFAY
CCCCCCCCCCCEECCCCCCCCHHCCCHHHHHEECCCCCEEEECCCCCCCCCCHHHHHHHH
NFRVLVPHDAVYDRSATSHAVNLFDMASKYADVMSTDEALEALRALV
CCEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1381445; 8913306 [H]