| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220905324
Identifier: 220905324
GI number: 220905324
Start: 2481897
End: 2483363
Strand: Direct
Name: 220905324
Synonym: Ddes_2062
Alternate gene names: NA
Gene position: 2481897-2483363 (Clockwise)
Preceding gene: 220905323
Following gene: 220905325
Centisome position: 86.37
GC content: 59.1
Gene sequence:
>1467_bases ATGCCGCATAACGCACGTACTTTCCTTCCAGCGCGGACTTATCTTCCGCTGCTGCTCGTTCTGACCCTTCTTTTCTCTGC CTGCGCCTCCAACAAGGCCGGACTCAAGTCGCCGGAACTCCCCGCCAGGCACTGGCTGGAAGAGGCTCCCGGGGTGCCGG TGGAAAACAAGGCCAAGCTCGAGGCTGCGGTTCCCAACCTTTATGATCCCGCCAAGGTCTTCACCTTTGAGGACTGCGTC TTTCTTACCATCCAGCAGTCGCCGCTTCTGGTCAACAGCGCGGTGGATCTGGAAATCAAGCGTGTTGCCCTTACCGACGC CGTGTGGAAATACCTGCCCGAACCACGCATGACCATGCAGGTTACCAACAACCTCACGCGCTACAACATGGACCACAAGG ACACCCCCGGCGACTACGGGCGCGCCAAGTTTACCGTGGGCTTTCACGCTGCCTTTCCCAATCCTGTGGCCGCCTATTTT GAACATCAGGTGCAAAAGGCCATGGTCAATCTGGCCATCTCCACCCACCGCAAGGCCGTGGGCGAGGCTATCTACAAGAT CGGTCAGGCCTACCTGCAGCTGCAGGCGCAGAAAAAAATCGTCAAAGCACAGAAAGATCTGCTGCCCATCGGCAAGGAAC TGGTTTCCTACTGGCAGCAGGTGGAAGCCGTTGACGGCCGCCAGGGGGTTTCCCTCAATCTGGCAATGCAGCACCAGCGC GAGCTTGAGCTTATGCTGGAGCAGACCAAGATGAAAGAAACCATGCAGCTTACCCAGCTCAAGATCCTCGCGGGCGTGGA CCCCCAGCAGCGTCTGGATGTGGACACCTCCAGCGCCGAAGAAATCCTGCGCGGTTTCAACGGGCGCAAACTCAAATGGG ATGAACGCTGGACCACTACCGAAGACGATCTGCTGCTGCGCGGCCAGATCAAGCTCGGTGACTATAACATCATGGTTGCC TGGGCACAGTATATTCCCGACATGAGCATCGCCATCGACAAAAACCCGCCCGCCGGTCAGTATCAGCCGGCCAGCGGCAG TGAGGATACCTTCCTGCACCTGAACTTCAGCTTCCCCCTGCTGGACTGGGGGCGCCGTTACCGCGGTGTGCAGACTGCCC GCATGCAGAAGGCGCAGGCATTCCACGAAATGGCACGCAAGCGCACCGACTATTCCAACCGGTGGCTGCAGGCCGAACAG AGCGTGGCCCTGGCAGAAACCGAACTCAAGCTGGCACGTACGCGCTTTGACACAGCGGCCATGCAGTTCAAGGAAGCCCA TATTTCTTTCAACGAAGGCATCGCCGAACTGCCCGCCGTGGCCGACAGGCAGGAAGCCATGGTGCAGGCCCAGGTGGCCC TTATCCGCGCCGAGCTGTCCTGCGAGCTGGCCCAGCTTGAATGGATGTATCTTTCCACGGCCCTTCAGGAACATTTCCTC GGCCTGCCCGCCAAAGAGGTGCTGTAA
Upstream 100 bases:
>100_bases ACCGGCGGGACCACGGACCCACCGCGCCTTAGCGCGTTCCCGCCGCAACAACCGTGACCATACCAACGCGCCGGGCGCGC GAGCCTGTAAAGGGTGCCAG
Downstream 100 bases:
>100_bases TGCAACGCCTTGCCCGTCTACGCTTTTTCGCCGCGCCCGGCCTGTTTCTGACACTGGTCCTGCTGTGCAGCCTGGCATTC GCTGCCGCTGCCTCCGCGGC
Product: Outer membrane protein-like protein
Products: NA
Alternate protein names: Outer Membrane Protein-Like Protein
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MPHNARTFLPARTYLPLLLVLTLLFSACASNKAGLKSPELPARHWLEEAPGVPVENKAKLEAAVPNLYDPAKVFTFEDCV FLTIQQSPLLVNSAVDLEIKRVALTDAVWKYLPEPRMTMQVTNNLTRYNMDHKDTPGDYGRAKFTVGFHAAFPNPVAAYF EHQVQKAMVNLAISTHRKAVGEAIYKIGQAYLQLQAQKKIVKAQKDLLPIGKELVSYWQQVEAVDGRQGVSLNLAMQHQR ELELMLEQTKMKETMQLTQLKILAGVDPQQRLDVDTSSAEEILRGFNGRKLKWDERWTTTEDDLLLRGQIKLGDYNIMVA WAQYIPDMSIAIDKNPPAGQYQPASGSEDTFLHLNFSFPLLDWGRRYRGVQTARMQKAQAFHEMARKRTDYSNRWLQAEQ SVALAETELKLARTRFDTAAMQFKEAHISFNEGIAELPAVADRQEAMVQAQVALIRAELSCELAQLEWMYLSTALQEHFL GLPAKEVL
Sequences:
>Translated_488_residues MPHNARTFLPARTYLPLLLVLTLLFSACASNKAGLKSPELPARHWLEEAPGVPVENKAKLEAAVPNLYDPAKVFTFEDCV FLTIQQSPLLVNSAVDLEIKRVALTDAVWKYLPEPRMTMQVTNNLTRYNMDHKDTPGDYGRAKFTVGFHAAFPNPVAAYF EHQVQKAMVNLAISTHRKAVGEAIYKIGQAYLQLQAQKKIVKAQKDLLPIGKELVSYWQQVEAVDGRQGVSLNLAMQHQR ELELMLEQTKMKETMQLTQLKILAGVDPQQRLDVDTSSAEEILRGFNGRKLKWDERWTTTEDDLLLRGQIKLGDYNIMVA WAQYIPDMSIAIDKNPPAGQYQPASGSEDTFLHLNFSFPLLDWGRRYRGVQTARMQKAQAFHEMARKRTDYSNRWLQAEQ SVALAETELKLARTRFDTAAMQFKEAHISFNEGIAELPAVADRQEAMVQAQVALIRAELSCELAQLEWMYLSTALQEHFL GLPAKEVL >Mature_487_residues PHNARTFLPARTYLPLLLVLTLLFSACASNKAGLKSPELPARHWLEEAPGVPVENKAKLEAAVPNLYDPAKVFTFEDCVF LTIQQSPLLVNSAVDLEIKRVALTDAVWKYLPEPRMTMQVTNNLTRYNMDHKDTPGDYGRAKFTVGFHAAFPNPVAAYFE HQVQKAMVNLAISTHRKAVGEAIYKIGQAYLQLQAQKKIVKAQKDLLPIGKELVSYWQQVEAVDGRQGVSLNLAMQHQRE LELMLEQTKMKETMQLTQLKILAGVDPQQRLDVDTSSAEEILRGFNGRKLKWDERWTTTEDDLLLRGQIKLGDYNIMVAW AQYIPDMSIAIDKNPPAGQYQPASGSEDTFLHLNFSFPLLDWGRRYRGVQTARMQKAQAFHEMARKRTDYSNRWLQAEQS VALAETELKLARTRFDTAAMQFKEAHISFNEGIAELPAVADRQEAMVQAQVALIRAELSCELAQLEWMYLSTALQEHFLG LPAKEVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55314; Mature: 55183
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHNARTFLPARTYLPLLLVLTLLFSACASNKAGLKSPELPARHWLEEAPGVPVENKAKL CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHH EAAVPNLYDPAKVFTFEDCVFLTIQQSPLLVNSAVDLEIKRVALTDAVWKYLPEPRMTMQ HHHCCCCCCCHHEEEECCEEEEEEECCCEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEH VTNNLTRYNMDHKDTPGDYGRAKFTVGFHAAFPNPVAAYFEHQVQKAMVNLAISTHRKAV HHCCHHEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GEAIYKIGQAYLQLQAQKKIVKAQKDLLPIGKELVSYWQQVEAVDGRQGVSLNLAMQHQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH ELELMLEQTKMKETMQLTQLKILAGVDPQQRLDVDTSSAEEILRGFNGRKLKWDERWTTT HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCC EDDLLLRGQIKLGDYNIMVAWAQYIPDMSIAIDKNPPAGQYQPASGSEDTFLHLNFSFPL CCCEEEEEEEEECCEEEEEEEHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCH LDWGRRYRGVQTARMQKAQAFHEMARKRTDYSNRWLQAEQSVALAETELKLARTRFDTAA HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQFKEAHISFNEGIAELPAVADRQEAMVQAQVALIRAELSCELAQLEWMYLSTALQEHFL HHHHHHHCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLPAKEVL CCCHHHCC >Mature Secondary Structure PHNARTFLPARTYLPLLLVLTLLFSACASNKAGLKSPELPARHWLEEAPGVPVENKAKL CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHH EAAVPNLYDPAKVFTFEDCVFLTIQQSPLLVNSAVDLEIKRVALTDAVWKYLPEPRMTMQ HHHCCCCCCCHHEEEECCEEEEEEECCCEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEH VTNNLTRYNMDHKDTPGDYGRAKFTVGFHAAFPNPVAAYFEHQVQKAMVNLAISTHRKAV HHCCHHEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GEAIYKIGQAYLQLQAQKKIVKAQKDLLPIGKELVSYWQQVEAVDGRQGVSLNLAMQHQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH ELELMLEQTKMKETMQLTQLKILAGVDPQQRLDVDTSSAEEILRGFNGRKLKWDERWTTT HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCC EDDLLLRGQIKLGDYNIMVAWAQYIPDMSIAIDKNPPAGQYQPASGSEDTFLHLNFSFPL CCCEEEEEEEEECCEEEEEEEHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCH LDWGRRYRGVQTARMQKAQAFHEMARKRTDYSNRWLQAEQSVALAETELKLARTRFDTAA HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQFKEAHISFNEGIAELPAVADRQEAMVQAQVALIRAELSCELAQLEWMYLSTALQEHFL HHHHHHHCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLPAKEVL CCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA