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The map label for this gene is cbiD [H]

Identifier: 220905240

GI number: 220905240

Start: 2380479

End: 2381948

Strand: Direct

Name: cbiD [H]

Synonym: Ddes_1978

Alternate gene names: 220905240

Gene position: 2380479-2381948 (Clockwise)

Preceding gene: 220905239

Following gene: 220905241

Centisome position: 82.84

GC content: 65.03

Gene sequence:

>1470_bases
ATGGCCGCAAAGCTGCGCGAAGGATTCACCACCGGCTCGGCAGCCACGGGCGCAGCCCTGGCCGCCCTGCACCTGCTGCG
CTCCGGCTCTGCACCCGACCATGTGGATGTGCCGCTGCCGCCCTTTGCTGCACAGTCGGCTCCCGAATGTCCGGGCAGCC
CCGTAGCGGACGCGGAGGCAGAACAGGTTTCCAGCCACCGCGCAGACACGGGCGCCTACCAGCATGCCGGGCAGGCAGCC
CAAAAGAAGACCTTGGAACATCCGGCCCCGGCGGAGCATGATGCACAGAAGCCCGGCAGCGCCACGCAAGACCTGCGTCC
CAGAGGCTGGCTGCGTCTTGCGGTGGCGGCCTGTGCCCCCGGCCCGGCCCCCGAACTGGCCGCGTTTGCCGGATTTTCCG
CCGGACTGCCGCCGGATGCTGACAAAGTAGATGCCGTCGGATCAGGTACAGCCCGCGCCCCGCTGCGGCTGGCACACGCC
TCTATCCGCAAAGACGGCGGCGATGACCCGGATGCCACATCTGGAGCACTCGTTACGGCCACTGTAATTATGGAAGGCCC
CTGGCAGACGGACAGCCTTGCACCCGATCCCGGCGGAATGGCGCACGATTCAACATGCCCGGCCCAGGAGCCATCTGCCG
ACCCCGTCCCGATGCCTCTGAGCACGGGATTGCGTATTACTATTGAAGGCGGTCCGGGGGTGGGGCGCATAACTCTGCCC
GGCCTGCCAGTACCCGTGGGTGAAGCGGCCATCAATCCCGTGCCTCGCCAGCAGATCGCCTTTGCCCTGCGTCATGCTGT
TGCGTCCGCTTGGTCCCCATGCCCGCCCTTGCGCGTGATTATCAGCGTTCCCGAAGGCGAACGACTGGCCCGGCAGACAT
TCAACCCACGGCTGGGCATTGTAGGCGGCATTTCCATTCTGGGTACGCAGGGCACTGTGCGCCCGTACAGCCACAAAGCC
TGGAAAGCCACCATCGAGCAGGGCCTGGCCGTGGCTGCGGCCACAGGCTGCCGGTCCATTGCCCTGACCACGGGCAGACG
CTCCGAACGCCTGCTCATGGAGCGCTACCCCCACATGCCGCAACAGTGCTTCATACAGGTAGCTGACTTTGCAGCTTTTT
CCTTGCAGGCCGCCGGAGCCGGAAATTTTGACAATCTTGTGTGGGGCTGTTTTTTCGGCAAGCTGGTCAAGCTGGCCCAG
GGGCATGCCTACACCCACGCCCGCCACGCGGATCTGGACATGGCGGGCCTTGCCCGCGTATGTGAACAGTACGGCGCACA
CTGCGCGGGGCAGGTAAAAAACTGCGTCACCGCCGCCCACGCCCTGGAGCTGCTTTTGCAGGACAGGGCCGGATCAGACG
TTATACGGCAGGTGGCCGCCAAAGCCGCTGCAGTGGCGGCAAAATTTGCGGGACACCCCGTGCGGCTGCACCTTTTTCAC
ACCGACGGCAGGGAATTACTGGCATTATGA

Upstream 100 bases:

>100_bases
GTCTTTTCAGCGAAGACGGAACCGCCATGGCGGGCATAAACGGCCCGGTAGCCCTGGTTGCCGATGGGCAGGTGTGGTTG
CCCGGCGGCGTCATCTGAGT

Downstream 100 bases:

>100_bases
AAAATCAGGTTGCACTGCCCGGCATTGCCGTGCCCTCCCCCACACCGAGCGAAGACGCGAGCCGGACTGCAGCGACTGGC
CCCCCGGAGACGCGTGAGGC

Product: cobalamin (vitamin B12) biosynthesis CbiD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MAAKLREGFTTGSAATGAALAALHLLRSGSAPDHVDVPLPPFAAQSAPECPGSPVADAEAEQVSSHRADTGAYQHAGQAA
QKKTLEHPAPAEHDAQKPGSATQDLRPRGWLRLAVAACAPGPAPELAAFAGFSAGLPPDADKVDAVGSGTARAPLRLAHA
SIRKDGGDDPDATSGALVTATVIMEGPWQTDSLAPDPGGMAHDSTCPAQEPSADPVPMPLSTGLRITIEGGPGVGRITLP
GLPVPVGEAAINPVPRQQIAFALRHAVASAWSPCPPLRVIISVPEGERLARQTFNPRLGIVGGISILGTQGTVRPYSHKA
WKATIEQGLAVAAATGCRSIALTTGRRSERLLMERYPHMPQQCFIQVADFAAFSLQAAGAGNFDNLVWGCFFGKLVKLAQ
GHAYTHARHADLDMAGLARVCEQYGAHCAGQVKNCVTAAHALELLLQDRAGSDVIRQVAAKAAAVAAKFAGHPVRLHLFH
TDGRELLAL

Sequences:

>Translated_489_residues
MAAKLREGFTTGSAATGAALAALHLLRSGSAPDHVDVPLPPFAAQSAPECPGSPVADAEAEQVSSHRADTGAYQHAGQAA
QKKTLEHPAPAEHDAQKPGSATQDLRPRGWLRLAVAACAPGPAPELAAFAGFSAGLPPDADKVDAVGSGTARAPLRLAHA
SIRKDGGDDPDATSGALVTATVIMEGPWQTDSLAPDPGGMAHDSTCPAQEPSADPVPMPLSTGLRITIEGGPGVGRITLP
GLPVPVGEAAINPVPRQQIAFALRHAVASAWSPCPPLRVIISVPEGERLARQTFNPRLGIVGGISILGTQGTVRPYSHKA
WKATIEQGLAVAAATGCRSIALTTGRRSERLLMERYPHMPQQCFIQVADFAAFSLQAAGAGNFDNLVWGCFFGKLVKLAQ
GHAYTHARHADLDMAGLARVCEQYGAHCAGQVKNCVTAAHALELLLQDRAGSDVIRQVAAKAAAVAAKFAGHPVRLHLFH
TDGRELLAL
>Mature_488_residues
AAKLREGFTTGSAATGAALAALHLLRSGSAPDHVDVPLPPFAAQSAPECPGSPVADAEAEQVSSHRADTGAYQHAGQAAQ
KKTLEHPAPAEHDAQKPGSATQDLRPRGWLRLAVAACAPGPAPELAAFAGFSAGLPPDADKVDAVGSGTARAPLRLAHAS
IRKDGGDDPDATSGALVTATVIMEGPWQTDSLAPDPGGMAHDSTCPAQEPSADPVPMPLSTGLRITIEGGPGVGRITLPG
LPVPVGEAAINPVPRQQIAFALRHAVASAWSPCPPLRVIISVPEGERLARQTFNPRLGIVGGISILGTQGTVRPYSHKAW
KATIEQGLAVAAATGCRSIALTTGRRSERLLMERYPHMPQQCFIQVADFAAFSLQAAGAGNFDNLVWGCFFGKLVKLAQG
HAYTHARHADLDMAGLARVCEQYGAHCAGQVKNCVTAAHALELLLQDRAGSDVIRQVAAKAAAVAAKFAGHPVRLHLFHT
DGRELLAL

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 50696; Mature: 50565

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS01323 PHOSPHOTRIESTERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKLREGFTTGSAATGAALAALHLLRSGSAPDHVDVPLPPFAAQSAPECPGSPVADAEA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
EQVSSHRADTGAYQHAGQAAQKKTLEHPAPAEHDAQKPGSATQDLRPRGWLRLAVAACAP
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCC
GPAPELAAFAGFSAGLPPDADKVDAVGSGTARAPLRLAHASIRKDGGDDPDATSGALVTA
CCCHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
TVIMEGPWQTDSLAPDPGGMAHDSTCPAQEPSADPVPMPLSTGLRITIEGGPGVGRITLP
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECC
GLPVPVGEAAINPVPRQQIAFALRHAVASAWSPCPPLRVIISVPEGERLARQTFNPRLGI
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCEE
VGGISILGTQGTVRPYSHKAWKATIEQGLAVAAATGCRSIALTTGRRSERLLMERYPHMP
EECEEEECCCCCCCCCCCHHHHHHHHHCHHEEECCCCCEEEEECCCCHHHHHHHHCCCCC
QQCFIQVADFAAFSLQAAGAGNFDNLVWGCFFGKLVKLAQGHAYTHARHADLDMAGLARV
HHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
CEQYGAHCAGQVKNCVTAAHALELLLQDRAGSDVIRQVAAKAAAVAAKFAGHPVRLHLFH
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
TDGRELLAL
CCCHHHHCC
>Mature Secondary Structure 
AAKLREGFTTGSAATGAALAALHLLRSGSAPDHVDVPLPPFAAQSAPECPGSPVADAEA
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
EQVSSHRADTGAYQHAGQAAQKKTLEHPAPAEHDAQKPGSATQDLRPRGWLRLAVAACAP
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCC
GPAPELAAFAGFSAGLPPDADKVDAVGSGTARAPLRLAHASIRKDGGDDPDATSGALVTA
CCCHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
TVIMEGPWQTDSLAPDPGGMAHDSTCPAQEPSADPVPMPLSTGLRITIEGGPGVGRITLP
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECC
GLPVPVGEAAINPVPRQQIAFALRHAVASAWSPCPPLRVIISVPEGERLARQTFNPRLGI
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCEE
VGGISILGTQGTVRPYSHKAWKATIEQGLAVAAATGCRSIALTTGRRSERLLMERYPHMP
EECEEEECCCCCCCCCCCHHHHHHHHHCHHEEECCCCCEEEEECCCCHHHHHHHHCCCCC
QQCFIQVADFAAFSLQAAGAGNFDNLVWGCFFGKLVKLAQGHAYTHARHADLDMAGLARV
HHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
CEQYGAHCAGQVKNCVTAAHALELLLQDRAGSDVIRQVAAKAAAVAAKFAGHPVRLHLFH
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
TDGRELLAL
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA