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The map label for this gene is smpB [H]

Identifier: 220905060

GI number: 220905060

Start: 2170106

End: 2170561

Strand: Direct

Name: smpB [H]

Synonym: Ddes_1797

Alternate gene names: 220905060

Gene position: 2170106-2170561 (Clockwise)

Preceding gene: 220905059

Following gene: 220905061

Centisome position: 75.52

GC content: 58.77

Gene sequence:

>456_bases
ATGAGCCAGAAAACATCTCCTTCCACCATTGCCGTCAATAAGAAGGCCCGCCACCTTTATGAACTTTCAGAGTTCACCGA
GGCGGGCGTTGTGCTTACCGGACCCGAAGTTAAAAGCATACGCGCGGGCAAGGTCAACTTCGTCGACAGTTACGTGGACT
TCCGCCGGGGCGAAGCCTGGCTGCTGTCACTGCACATCGCCCCCTATTCCAATGCGGGCTATGCTCCGCAGGAACCGGAA
CGCGCGCGCAAGCTGCTGCTGCACCAGCGCGAGATCGCCAAGCTGTCGGGTATTGTGGCCCAAAAGGGCCTTACCGTGGT
TCCTGTTCGGCTCTACCTCAAGCGGGGAAAAATCAAGGTTGAAATCGCCGTGGGCCGGGGCAAAAAGCTGCACGACCATC
GCGAAAGCCTGAAACGCCGCGCTGAAGAGCGTGATCTGGCCCGCGAGCTGTCGTAA

Upstream 100 bases:

>100_bases
ATGTGGCCGCTTCCCGCCGTATGGTGCGGGAAACCCTGCACCAGACCCTGGGACCGGAACTGGCTTTTCATACCACAAGC
CTTTTGACCCACAGCCAGCC

Downstream 100 bases:

>100_bases
ACGCCGTTCCTGCGCAAAAACTGCCCGGCGTGACCGATCTCCCCGCGGCAGGGCGAGTACACGCTGTTACCGCCGGATCT
CGTCTGCGCACAGCCGGCCG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSQKTSPSTIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGEAWLLSLHIAPYSNAGYAPQEPE
RARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLKRGKIKVEIAVGRGKKLHDHRESLKRRAEERDLARELS

Sequences:

>Translated_151_residues
MSQKTSPSTIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGEAWLLSLHIAPYSNAGYAPQEPE
RARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLKRGKIKVEIAVGRGKKLHDHRESLKRRAEERDLARELS
>Mature_150_residues
SQKTSPSTIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGEAWLLSLHIAPYSNAGYAPQEPER
ARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLKRGKIKVEIAVGRGKKLHDHRESLKRRAEERDLARELS

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=148, Percent_Identity=48.6486486486487, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17026; Mature: 16895

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKTSPSTIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGEAW
CCCCCCCCEEEECHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEE
LLSLHIAPYSNAGYAPQEPERARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLKRGKIKV
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHEEEEECCCEEE
EIAVGRGKKLHDHRESLKRRAEERDLARELS
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQKTSPSTIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGEAW
CCCCCCCEEEECHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEE
LLSLHIAPYSNAGYAPQEPERARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLKRGKIKV
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHEEEEECCCEEE
EIAVGRGKKLHDHRESLKRRAEERDLARELS
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA