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The map label for this gene is ywkB [H]

Identifier: 220904970

GI number: 220904970

Start: 2058897

End: 2059841

Strand: Direct

Name: ywkB [H]

Synonym: Ddes_1706

Alternate gene names: 220904970

Gene position: 2058897-2059841 (Clockwise)

Preceding gene: 220904969

Following gene: 220904972

Centisome position: 71.65

GC content: 57.99

Gene sequence:

>945_bases
ATGCTCGAAACAATAATCATGGCCCTGCTGCCCATTGTCGTGACCCTGCTGCTGGGCCTTCTGGCCGGATGGCGGCACGA
CTTCAGCCAGGACCAGGCCTCTGTGCTCAACCGCATGGTCATGCTTTATGCCCTGCCCATGCTCCTCTTTGCAGGGATTC
TCGGCACGCCGCTTGAAGAAGTGCTCAAAAATGCGCAGGTCTTCCTGTGGATCGCCATCGGCATGGCCGGAGGCTTTGTG
CTTGTTTTTCTGATTTCCCGCTTTGTCTTCCGGTCTGATGTAAAGCTCGCGGCCTTGCGCGGCCTGGCTATCGCCGGCCC
TGCCGTGCCTTTTGTGGGAACTCCGGTTCTGGGCATGCTTTTTCCCGTGGAGGCCGATCTCGCCATCGCCGCGGGCAGCA
TCCTCATGAATCTTGTTCAGGTGCCGCTGGCCCTCGTTTTTCTTGTGGGCGGGAGCGACAGCGGTTCTTCCGGGCAGAAA
AAAAATCCGGCGGCCATTGTATTCGGCAGTATTGCCAATGCGGTCAAGCAGCCTGTGGTATGGGCGCCGGTGCTGGCGTT
TGTACTGCTGCTGGCCGGACTGGACATGCCCAAAGTACTTAAAGGCTCATTTCTGCTGCTGGGGCAGGCCACGGGCGGTG
TCGCCCTGTTTGCCGTGGGCGCGGTGCTTTTTGCCCAGAAGGTAAGCGTGTCCCTGCCGGTAATCGTCAATGTCATCTGC
AAGAACATCCTGCTGCCCGGCCTTATCCTTCTGGTTATGATATGGCTGGCGGTTCCCGGTGCGGAACGCGGGCTGGTCGC
TGTAACCCTGGCTATTCCCACTGCCTCCATTGCCGTTATTTTTGCCGTGGAATATAAGTCCGGCGAACAGGAAATGGCCT
CTACCCTGTTCTGGAGCACCATACTCTCCGTAATAACAATGGGCGGATTCATCTGGCTGACCTAG

Upstream 100 bases:

>100_bases
AAGTGCCCATCGTCCCCACCATCCCGCCCCTGCTTTAGGCCAGAACCAAACACCATACCCGGATCCCGGCGGGTCCGGGT
ATGGCTAAAAGGAACCGTCC

Downstream 100 bases:

>100_bases
AACAATTACCACTTCAAATGATTGCTTAACGGTCGGCAAAGCCGCCCTACAATTATTTGGCGACAAGGAGTTGGAGACAG
ATCCTTGTCGCGCACTTCAA

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLETIIMALLPIVVTLLLGLLAGWRHDFSQDQASVLNRMVMLYALPMLLFAGILGTPLEEVLKNAQVFLWIAIGMAGGFV
LVFLISRFVFRSDVKLAALRGLAIAGPAVPFVGTPVLGMLFPVEADLAIAAGSILMNLVQVPLALVFLVGGSDSGSSGQK
KNPAAIVFGSIANAVKQPVVWAPVLAFVLLLAGLDMPKVLKGSFLLLGQATGGVALFAVGAVLFAQKVSVSLPVIVNVIC
KNILLPGLILLVMIWLAVPGAERGLVAVTLAIPTASIAVIFAVEYKSGEQEMASTLFWSTILSVITMGGFIWLT

Sequences:

>Translated_314_residues
MLETIIMALLPIVVTLLLGLLAGWRHDFSQDQASVLNRMVMLYALPMLLFAGILGTPLEEVLKNAQVFLWIAIGMAGGFV
LVFLISRFVFRSDVKLAALRGLAIAGPAVPFVGTPVLGMLFPVEADLAIAAGSILMNLVQVPLALVFLVGGSDSGSSGQK
KNPAAIVFGSIANAVKQPVVWAPVLAFVLLLAGLDMPKVLKGSFLLLGQATGGVALFAVGAVLFAQKVSVSLPVIVNVIC
KNILLPGLILLVMIWLAVPGAERGLVAVTLAIPTASIAVIFAVEYKSGEQEMASTLFWSTILSVITMGGFIWLT
>Mature_314_residues
MLETIIMALLPIVVTLLLGLLAGWRHDFSQDQASVLNRMVMLYALPMLLFAGILGTPLEEVLKNAQVFLWIAIGMAGGFV
LVFLISRFVFRSDVKLAALRGLAIAGPAVPFVGTPVLGMLFPVEADLAIAAGSILMNLVQVPLALVFLVGGSDSGSSGQK
KNPAAIVFGSIANAVKQPVVWAPVLAFVLLLAGLDMPKVLKGSFLLLGQATGGVALFAVGAVLFAQKVSVSLPVIVNVIC
KNILLPGLILLVMIWLAVPGAERGLVAVTLAIPTASIAVIFAVEYKSGEQEMASTLFWSTILSVITMGGFIWLT

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

Organism=Escherichia coli, GI1788715, Length=244, Percent_Identity=34.8360655737705, Blast_Score=124, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776
- InterPro:   IPR014024 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32975; Mature: 32975

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETIIMALLPIVVTLLLGLLAGWRHDFSQDQASVLNRMVMLYALPMLLFAGILGTPLEE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLKNAQVFLWIAIGMAGGFVLVFLISRFVFRSDVKLAALRGLAIAGPAVPFVGTPVLGML
HHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCCCCCCCCHHHHH
FPVEADLAIAAGSILMNLVQVPLALVFLVGGSDSGSSGQKKNPAAIVFGSIANAVKQPVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEHHHHHHHHCCHH
WAPVLAFVLLLAGLDMPKVLKGSFLLLGQATGGVALFAVGAVLFAQKVSVSLPVIVNVIC
HHHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
KNILLPGLILLVMIWLAVPGAERGLVAVTLAIPTASIAVIFAVEYKSGEQEMASTLFWST
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHH
ILSVITMGGFIWLT
HHHHHHHCCCEEEC
>Mature Secondary Structure
MLETIIMALLPIVVTLLLGLLAGWRHDFSQDQASVLNRMVMLYALPMLLFAGILGTPLEE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLKNAQVFLWIAIGMAGGFVLVFLISRFVFRSDVKLAALRGLAIAGPAVPFVGTPVLGML
HHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCCCCCCCCHHHHH
FPVEADLAIAAGSILMNLVQVPLALVFLVGGSDSGSSGQKKNPAAIVFGSIANAVKQPVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEHHHHHHHHCCHH
WAPVLAFVLLLAGLDMPKVLKGSFLLLGQATGGVALFAVGAVLFAQKVSVSLPVIVNVIC
HHHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
KNILLPGLILLVMIWLAVPGAERGLVAVTLAIPTASIAVIFAVEYKSGEQEMASTLFWST
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHH
ILSVITMGGFIWLT
HHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]