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The map label for this gene is ydeB [H]

Identifier: 220904723

GI number: 220904723

Start: 1743230

End: 1743745

Strand: Direct

Name: ydeB [H]

Synonym: Ddes_1455

Alternate gene names: 220904723

Gene position: 1743230-1743745 (Clockwise)

Preceding gene: 220904722

Following gene: 220904724

Centisome position: 60.67

GC content: 54.26

Gene sequence:

>516_bases
ATGTTCACGCCGAACGATCTCGTTGTATACCCAGCCCAGGGGGTGGGCAAGATAGAAAGCATCGATAGCCAGACTATTGG
CGGTATCGCATGTGATTTCTATATTGTTCGCATTCAGGCCAACAATGTAACGTTGATGGTTCCTGTTAACAATGCTGCAC
ACGTGGGGCTGCGCACTCTTACCACGACGGAAGAGGCGGAACGCATTCTTGAAGAGCTACGCAGCAGCACCGGCAAGGTT
GTTCATACCGGCCAGAACTGGAACCGGCGGTTCCGCGAGTATTCCGAACGCCTGAAAAGCCCCGAGCTTGCCGTGGTTAC
AGAAGTTCTACGCGAACTTCTGCTTATCGGCCGCACCAAGGAACTTTCTTTTGGTGAACGCCGCCTGCAGGAGCAGGCCA
TGGGACTCGTCACCGGTGAACTGGCCGAAGTGCTTAAGGTCGAGGAAGACAGCCTTCGGGATGAATTGCTTGAACTTTAT
GCGCCACCGCCACCGCCGGAAGAAAACCAGAACTGA

Upstream 100 bases:

>100_bases
GTTTCCAACTCATCTTTTATTCAAACAAAATTCGTGACTTCCAGCTTTTTCCGCTCCAGGTCTCGTACAGTGGCGCTCCT
TTGGGGCGTGTGGTGGCATA

Downstream 100 bases:

>100_bases
ACCGGCCCCTTTCGGGGCACCCCCAACCCGGTCTAAAAGACTGTATCTGCCCGCAATTAACGGCAAGCCGCTGTGTCGGG
TATGGCGCACACGACCCAAA

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTLTTTEEAERILEELRSSTGKV
VHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTKELSFGERRLQEQAMGLVTGELAEVLKVEEDSLRDELLELY
APPPPPEENQN

Sequences:

>Translated_171_residues
MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTLTTTEEAERILEELRSSTGKV
VHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTKELSFGERRLQEQAMGLVTGELAEVLKVEEDSLRDELLELY
APPPPPEENQN
>Mature_171_residues
MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTLTTTEEAERILEELRSSTGKV
VHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTKELSFGERRLQEQAMGLVTGELAEVLKVEEDSLRDELLELY
APPPPPEENQN

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19218; Mature: 19218

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTL
CCCCCCEEEECCCCCCCHHHCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCC
TTTEEAERILEELRSSTGKVVHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTK
CCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
ELSFGERRLQEQAMGLVTGELAEVLKVEEDSLRDELLELYAPPPPPEENQN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTL
CCCCCCEEEECCCCCCCHHHCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCC
TTTEEAERILEELRSSTGKVVHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTK
CCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
ELSFGERRLQEQAMGLVTGELAEVLKVEEDSLRDELLELYAPPPPPEENQN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]