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The map label for this gene is rplY

Identifier: 220904720

GI number: 220904720

Start: 1740403

End: 1741002

Strand: Direct

Name: rplY

Synonym: Ddes_1452

Alternate gene names: 220904720

Gene position: 1740403-1741002 (Clockwise)

Preceding gene: 220904719

Following gene: 220904721

Centisome position: 60.57

GC content: 55.83

Gene sequence:

>600_bases
ATGAATATTGAAAAGACTTTGAGCGTGCAAAAACGCGAAGGTTACGGCAAAGGCCCCAGCGGCCGCCTGCGTGCCCAGAA
ATTGATCCCGGGCGTGTTCTACACCCCCAAGGGTGAAAACATTTCCGTGCAGGCCCCTGCCCTGCCCCTGCAAAAAATTT
ACGAAGAAATGGGCCACACCACGGTGTTCAACCTCGAAATCGAGGAAAACGGCCAAAAAACCGCCTATCCCGTGCTTATC
TGGCAGGTGCAGTTCCACCCCTACAAGCGCGCTTTCACCCACATCGACTTTTACGGCGTGGACCTTGACAAGGAAGTCAC
CGTTGACGTACCCGTGGAATTTGTGGGTACCTCGCGCGGCGTGAAGCTTGGCGGCGTGCTCGAAACCTATCGCGAAATGG
TACGCCTCACCAGCAAGCCGCTGAACATGCCCCAGAAGATCACCGTTGACGTGACCGATATGGGCATCAACGACACCATC
AGCGTGGGCGACCTCAAGCTGCCCGAAAACGTGCGGGCCGAGTTTGACCAGAACTATGCCCTGGTGACGGTCATCTCCAA
AAGCAAGGACGATGCCGAAGAAGAAGGCGACGAAGACTAG

Upstream 100 bases:

>100_bases
GACGCAGTCTCAGGCGGTCAGAAAGCAAAAAGACCGGCGGGCGGCATTTCTCAAGAACTTTTCCGCACGTGTCAGGCGGC
GGTAAGCCAAGGAGTGGACC

Downstream 100 bases:

>100_bases
CTTTTGTCCGGGCCGGCAGACCGATGAGCCGGTCAGGCCATTTACGACCATTTATGGCCGGTTCCTTGCGGAACCGGCCT
CCTTTTTAGAACAGATGCAT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNIEKTLSVQKREGYGKGPSGRLRAQKLIPGVFYTPKGENISVQAPALPLQKIYEEMGHTTVFNLEIEENGQKTAYPVLI
WQVQFHPYKRAFTHIDFYGVDLDKEVTVDVPVEFVGTSRGVKLGGVLETYREMVRLTSKPLNMPQKITVDVTDMGINDTI
SVGDLKLPENVRAEFDQNYALVTVISKSKDDAEEEGDED

Sequences:

>Translated_199_residues
MNIEKTLSVQKREGYGKGPSGRLRAQKLIPGVFYTPKGENISVQAPALPLQKIYEEMGHTTVFNLEIEENGQKTAYPVLI
WQVQFHPYKRAFTHIDFYGVDLDKEVTVDVPVEFVGTSRGVKLGGVLETYREMVRLTSKPLNMPQKITVDVTDMGINDTI
SVGDLKLPENVRAEFDQNYALVTVISKSKDDAEEEGDED
>Mature_199_residues
MNIEKTLSVQKREGYGKGPSGRLRAQKLIPGVFYTPKGENISVQAPALPLQKIYEEMGHTTVFNLEIEENGQKTAYPVLI
WQVQFHPYKRAFTHIDFYGVDLDKEVTVDVPVEFVGTSRGVKLGGVLETYREMVRLTSKPLNMPQKITVDVTDMGINDTI
SVGDLKLPENVRAEFDQNYALVTVISKSKDDAEEEGDED

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_DESDA (B8J0S7)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002480032.1
- GeneID:   7285149
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_1452
- HOGENOM:   HBG731986
- ProtClustDB:   PRK05618
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 22352; Mature: 22352

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEKTLSVQKREGYGKGPSGRLRAQKLIPGVFYTPKGENISVQAPALPLQKIYEEMGHT
CCCCHHEEEHHCCCCCCCCCCCEEHHHHCCCEEECCCCCCEEEECCCCCHHHHHHHHCCE
TVFNLEIEENGQKTAYPVLIWQVQFHPYKRAFTHIDFYGVDLDKEVTVDVPVEFVGTSRG
EEEEEEECCCCCCEEEEEEEEEEEECCHHHHEEEEEEEECCCCCEEEEECCEEEECCCCC
VKLGGVLETYREMVRLTSKPLNMPQKITVDVTDMGINDTISVGDLKLPENVRAEFDQNYA
EEECHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCEECCHHHHHHCCCCEE
LVTVISKSKDDAEEEGDED
EEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MNIEKTLSVQKREGYGKGPSGRLRAQKLIPGVFYTPKGENISVQAPALPLQKIYEEMGHT
CCCCHHEEEHHCCCCCCCCCCCEEHHHHCCCEEECCCCCCEEEECCCCCHHHHHHHHCCE
TVFNLEIEENGQKTAYPVLIWQVQFHPYKRAFTHIDFYGVDLDKEVTVDVPVEFVGTSRG
EEEEEEECCCCCCEEEEEEEEEEEECCHHHHEEEEEEEECCCCCEEEEECCEEEECCCCC
VKLGGVLETYREMVRLTSKPLNMPQKITVDVTDMGINDTISVGDLKLPENVRAEFDQNYA
EEECHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCEECCHHHHHHCCCCEE
LVTVISKSKDDAEEEGDED
EEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA