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The map label for this gene is ybgF [H]

Identifier: 220904238

GI number: 220904238

Start: 1125679

End: 1127142

Strand: Direct

Name: ybgF [H]

Synonym: Ddes_0965

Alternate gene names: 220904238

Gene position: 1125679-1127142 (Clockwise)

Preceding gene: 220904236

Following gene: 220904239

Centisome position: 39.18

GC content: 64.48

Gene sequence:

>1464_bases
ATGAAAAAAATCTTTGCAGTACCCTTGGTTTGCGCGGCACTAGCTGCCGGCTGCGCTTCTTCCGCCCAGATGCGGCATGT
GGAAGAAAAAAATTCTGCCAACCAGCAGGCTCTGCGCGAAACTGACCGGCGTCTGCATACGCTGGAGCAGAATGTGGCTG
TTCTGGACAGTCAGATGGCCCAGCTCAGAAACCGCAGTTTTGAAGTGCGCACCCGGGGCGGCAAAAAAACCGGTATGACA
GTGGTGCCCATACTGCCTCCGGCGGCTCCCGCTGTTTCTGTTTCAGCCCCGGCAAGCGTTGCTGCCGCGCCCGGCACCCC
GGGGCAAGCCGTTCCACCCGTGGAACCGAATGCCGCGCTGGGCAAACATGGCCCTGAAGTGGCTGCCGCACATCCTGCCG
TTGCCGCTCCGTCTGCAAGCGCCAATGGCACGGCGCCGTCCGGCACAGGCGCAAAAGGGCCGAAGATTCCCGCGTCGTCT
CCTGCTGCGTCCGAAGCGCCCAAGGGCAGGGTTATTGACCCCGCGGCGCCTGTGCGGCCATTCCCGTCGGTTGCGGCTTC
TGCAGAATCCGCTGGCCCGGGTCCCCGTGCGCCGGAGGGGGGGCACGCGTCCGGCCAGAGTGCCAAGGCCGGCCCCATCG
GTGCTGTAGGAGAAACGGTGAAAAAACAGGTGGCGCCGGCTAACGGCGAAACAGTGCCCGTGGGGCTGCCCCCTGTGGCT
GCGCCGGAACCGTCAGCACCACCCGCTCTTGATCCCGTCAATTTTGCTGCTCCCAATGCCGGGCAACCTGTTGTTCCCAC
GGTTGCAGACAAGGGGGATCCAGCCGGCGGCAATGCTGCCGTACCCGTGCCCCATCTGCCGCCTTCAAGCCTGGCCCTGC
CGCCGGAACATCCCGGCCTGCCTCCGGTGGAAGCCCCGGTTGCAAGCGCAAATGTCACGGCACCGTCTGCCGCTCCGGCA
GGCATTGCACCCGGGACTCCGGGTATCCCCACGACTGCCTCCCGGCAAACCGGCTCCCTTCAGGATGTTTCTGCCGCTTC
GGAAAAGGCCGCTTCCGCAGCAGGTGCGGCACAAAAGCCCGTGCGCCCCATCAAAGGGGAAAAGGCGGCCTACGAAGCGG
CTCTCAAGGTGGTCATGGCCGGGCGCCCCGTTGAAGGTATATCTCGCTTCGAGACGTTTTTGCAGGAATATCCGCAAGGT
ACTTACGCGCCCAACGCGGAATACTGGATTGGCGAAGGCCTGTACACTCAGGGCAAATACCGCGAAGCGCTGGCGCAGTT
CCGCAAGGTGGACGCCTCGTACCCGCAGCATCATAAAAATGCCGATGCGCTGCTCAAGACAGGCATGTGCCTGAGCCGCC
TTGGCGACAAGGAAGCGGCGGGGCAGGCCTACAGCCAGTTGCTGGCGCGTTTTCCCAAATCCGAGGCCGCCCGCCTGGCG
CGGACGCGCGGCCTGGCCCGCTAG

Upstream 100 bases:

>100_bases
AAAAATGTGTGCAGACCTGTATTTGCCTTAAAAAGGCCGGGGCCGCAAGGGTTCTTGAAATATGGCCGGGCTTGGGGCAG
AACTACAGGGGAGGCTGGTT

Downstream 100 bases:

>100_bases
CATGAATCGCGGCACTGTCTGGTCGGAATTGAGCGATGAAGCCCGCACGGAATACTGGGCCGCTCTGGCCCTGCGCCACT
GTGCGGGGCTTGGCGCCAGA

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKKIFAVPLVCAALAAGCASSAQMRHVEEKNSANQQALRETDRRLHTLEQNVAVLDSQMAQLRNRSFEVRTRGGKKTGMT
VVPILPPAAPAVSVSAPASVAAAPGTPGQAVPPVEPNAALGKHGPEVAAAHPAVAAPSASANGTAPSGTGAKGPKIPASS
PAASEAPKGRVIDPAAPVRPFPSVAASAESAGPGPRAPEGGHASGQSAKAGPIGAVGETVKKQVAPANGETVPVGLPPVA
APEPSAPPALDPVNFAAPNAGQPVVPTVADKGDPAGGNAAVPVPHLPPSSLALPPEHPGLPPVEAPVASANVTAPSAAPA
GIAPGTPGIPTTASRQTGSLQDVSAASEKAASAAGAAQKPVRPIKGEKAAYEAALKVVMAGRPVEGISRFETFLQEYPQG
TYAPNAEYWIGEGLYTQGKYREALAQFRKVDASYPQHHKNADALLKTGMCLSRLGDKEAAGQAYSQLLARFPKSEAARLA
RTRGLAR

Sequences:

>Translated_487_residues
MKKIFAVPLVCAALAAGCASSAQMRHVEEKNSANQQALRETDRRLHTLEQNVAVLDSQMAQLRNRSFEVRTRGGKKTGMT
VVPILPPAAPAVSVSAPASVAAAPGTPGQAVPPVEPNAALGKHGPEVAAAHPAVAAPSASANGTAPSGTGAKGPKIPASS
PAASEAPKGRVIDPAAPVRPFPSVAASAESAGPGPRAPEGGHASGQSAKAGPIGAVGETVKKQVAPANGETVPVGLPPVA
APEPSAPPALDPVNFAAPNAGQPVVPTVADKGDPAGGNAAVPVPHLPPSSLALPPEHPGLPPVEAPVASANVTAPSAAPA
GIAPGTPGIPTTASRQTGSLQDVSAASEKAASAAGAAQKPVRPIKGEKAAYEAALKVVMAGRPVEGISRFETFLQEYPQG
TYAPNAEYWIGEGLYTQGKYREALAQFRKVDASYPQHHKNADALLKTGMCLSRLGDKEAAGQAYSQLLARFPKSEAARLA
RTRGLAR
>Mature_487_residues
MKKIFAVPLVCAALAAGCASSAQMRHVEEKNSANQQALRETDRRLHTLEQNVAVLDSQMAQLRNRSFEVRTRGGKKTGMT
VVPILPPAAPAVSVSAPASVAAAPGTPGQAVPPVEPNAALGKHGPEVAAAHPAVAAPSASANGTAPSGTGAKGPKIPASS
PAASEAPKGRVIDPAAPVRPFPSVAASAESAGPGPRAPEGGHASGQSAKAGPIGAVGETVKKQVAPANGETVPVGLPPVA
APEPSAPPALDPVNFAAPNAGQPVVPTVADKGDPAGGNAAVPVPHLPPSSLALPPEHPGLPPVEAPVASANVTAPSAAPA
GIAPGTPGIPTTASRQTGSLQDVSAASEKAASAAGAAQKPVRPIKGEKAAYEAALKVVMAGRPVEGISRFETFLQEYPQG
TYAPNAEYWIGEGLYTQGKYREALAQFRKVDASYPQHHKNADALLKTGMCLSRLGDKEAAGQAYSQLLARFPKSEAARLA
RTRGLAR

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=114, Percent_Identity=35.0877192982456, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48988; Mature: 48988

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFAVPLVCAALAAGCASSAQMRHVEEKNSANQQALRETDRRLHTLEQNVAVLDSQMA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRNRSFEVRTRGGKKTGMTVVPILPPAAPAVSVSAPASVAAAPGTPGQAVPPVEPNAAL
HHHCCCEEEEECCCCCCCCEEEEECCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCC
GKHGPEVAAAHPAVAAPSASANGTAPSGTGAKGPKIPASSPAASEAPKGRVIDPAAPVRP
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
FPSVAASAESAGPGPRAPEGGHASGQSAKAGPIGAVGETVKKQVAPANGETVPVGLPPVA
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCC
APEPSAPPALDPVNFAAPNAGQPVVPTVADKGDPAGGNAAVPVPHLPPSSLALPPEHPGL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPVEAPVASANVTAPSAAPAGIAPGTPGIPTTASRQTGSLQDVSAASEKAASAAGAAQKP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
VRPIKGEKAAYEAALKVVMAGRPVEGISRFETFLQEYPQGTYAPNAEYWIGEGLYTQGKY
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHH
REALAQFRKVDASYPQHHKNADALLKTGMCLSRLGDKEAAGQAYSQLLARFPKSEAARLA
HHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHH
RTRGLAR
HHHCCCC
>Mature Secondary Structure
MKKIFAVPLVCAALAAGCASSAQMRHVEEKNSANQQALRETDRRLHTLEQNVAVLDSQMA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRNRSFEVRTRGGKKTGMTVVPILPPAAPAVSVSAPASVAAAPGTPGQAVPPVEPNAAL
HHHCCCEEEEECCCCCCCCEEEEECCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCC
GKHGPEVAAAHPAVAAPSASANGTAPSGTGAKGPKIPASSPAASEAPKGRVIDPAAPVRP
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
FPSVAASAESAGPGPRAPEGGHASGQSAKAGPIGAVGETVKKQVAPANGETVPVGLPPVA
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCC
APEPSAPPALDPVNFAAPNAGQPVVPTVADKGDPAGGNAAVPVPHLPPSSLALPPEHPGL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPVEAPVASANVTAPSAAPAGIAPGTPGIPTTASRQTGSLQDVSAASEKAASAAGAAQKP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
VRPIKGEKAAYEAALKVVMAGRPVEGISRFETFLQEYPQGTYAPNAEYWIGEGLYTQGKY
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHH
REALAQFRKVDASYPQHHKNADALLKTGMCLSRLGDKEAAGQAYSQLLARFPKSEAARLA
HHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHH
RTRGLAR
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]