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The map label for this gene is rfaF [C]

Identifier: 220904235

GI number: 220904235

Start: 1121435

End: 1122724

Strand: Direct

Name: rfaF [C]

Synonym: Ddes_0962

Alternate gene names: 220904235

Gene position: 1121435-1122724 (Clockwise)

Preceding gene: 220904229

Following gene: 220904236

Centisome position: 39.03

GC content: 61.86

Gene sequence:

>1290_bases
ATGGCGGCATTTCTGGTGCTTCAGGCAGCGCGTTTCGGCGATGTGGTGCAAACAGGGCGTTTGTTGCATGGCCTCGCGGC
GCGCGGGCAGGTACATCTGGCGGTGGATGAAAGCCTGGTTGCCTTGGCGCGCCTTCTCTATCCTTTCGCGCAGATACACG
GCTTGCACCTGCACGGCTGCGACGAAAACGGAATTTTACAAAAAAACAGGCCTGTATTGGCGCAATGGCGGCATGAAAAT
TTCAGCACCGTCTATAACTGCAATTTCTCTGGCCTCACTGCTGCCCTGTGCCGGATTTTTGAGCCGGAGCAGGTGCAGGG
CTACAGGCCGGCACCCGGCGGCATATGGCGTTCGCCGTGGGCGCGGATGGCATTTCGTCTGAGCGGGCGGCGTGTGCTTT
CGCCTCTCAATCTTGTGGATTTCTGGGCGTTTTTTGGTCCTGACCCTCTGCGGCCCCAACAGGTGAATCCTGAGGCAGCG
CCCGGCGGTCAGGGGCTTGGCGTGGTGCTTGCCGGCCGCGAATCACGCCGGTCGTTACCCATACCTTTGCTGGCAGATGT
AGTGCGCACGACGTTTTCGGCTATGGGCGGGCCGCGTGTGCTGCTTTTCGGTACAGCGGCGGAACAGCCCGCCGCCCGCA
GGCTGCTGCGTCTGCTGCCCGCAAAAATGCAGGACAGGGTGGAAGACCTGAGCGGAAAGACCGGCTGGCCCGGGCTTGTG
ACTGCCGTGCAGGGGTTGGATGCCGTCATTACGCCGGATACGGGAACCATGCATCTGGCTGCGAGGCTCGGCGTACCCGT
GCTGGCTTTTTTTCTGTCTTCGGCCCTGGCACACGAAACCGGGCCTTACGGGCAGGGGCATTTTGTCTGGCAGGCCTCGC
GCGCCTGCGCGCCCTGTCTTGAAACGGCCCCATGCCCTTACAATGTGGCCTGTCTTGAACCTTTCCGCAGTCGGGAACTG
CTGCGCTCATTGACGCTTGCCCTGGCCGGTGATGCAGGGCGTGCGGTTTTGCCCGATGGTCTGCAATTGTGGCGCAGCCA
GGTGGATAGTCTGGGTACGGTGCTGCGCCTGAAATCCGGTAAAGATCCGCATGCCGAGCGGCGTCAGCGGGTGCGGGAAT
ATCTGGCCTCTTTTTTACGCCTGTCTCCACCCGGAGCAGTGGATACGCCGCCTCCGGTCATCGCGGGCGAAAAAACGGCG
TATCCGTCGGGCGCGGCTGGTGACGAAGGGGTTGATCAATGGCTGTGCGGCGATGCGGACTGGATGTTGCCGCTGGAACG
ATACCGCTGA

Upstream 100 bases:

>100_bases
GGGGCTATTGCCTTACCTTTTCATAATGCGGAAGCCCGGCAATGCCATCTGTCGGGCCTTTTGAAGTGATTGTGAATCCG
GCGTCCGGCAAGGAAGGGGT

Downstream 100 bases:

>100_bases
TGTGGAGAACACGCTGATGCCCATGACTCCTTTAAGAATACTGGTTGTTTTGCCCATGTATGGCGGGTCGTTGCCTGTGG
GCAGGTACTGCGTGCGCGCT

Product: heptosyltransferase family protein

Products: NA

Alternate protein names: ADP-HeptoseLPS Heptosyltransferase; Glycosyltransferase

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MAAFLVLQAARFGDVVQTGRLLHGLAARGQVHLAVDESLVALARLLYPFAQIHGLHLHGCDENGILQKNRPVLAQWRHEN
FSTVYNCNFSGLTAALCRIFEPEQVQGYRPAPGGIWRSPWARMAFRLSGRRVLSPLNLVDFWAFFGPDPLRPQQVNPEAA
PGGQGLGVVLAGRESRRSLPIPLLADVVRTTFSAMGGPRVLLFGTAAEQPAARRLLRLLPAKMQDRVEDLSGKTGWPGLV
TAVQGLDAVITPDTGTMHLAARLGVPVLAFFLSSALAHETGPYGQGHFVWQASRACAPCLETAPCPYNVACLEPFRSREL
LRSLTLALAGDAGRAVLPDGLQLWRSQVDSLGTVLRLKSGKDPHAERRQRVREYLASFLRLSPPGAVDTPPPVIAGEKTA
YPSGAAGDEGVDQWLCGDADWMLPLERYR

Sequences:

>Translated_429_residues
MAAFLVLQAARFGDVVQTGRLLHGLAARGQVHLAVDESLVALARLLYPFAQIHGLHLHGCDENGILQKNRPVLAQWRHEN
FSTVYNCNFSGLTAALCRIFEPEQVQGYRPAPGGIWRSPWARMAFRLSGRRVLSPLNLVDFWAFFGPDPLRPQQVNPEAA
PGGQGLGVVLAGRESRRSLPIPLLADVVRTTFSAMGGPRVLLFGTAAEQPAARRLLRLLPAKMQDRVEDLSGKTGWPGLV
TAVQGLDAVITPDTGTMHLAARLGVPVLAFFLSSALAHETGPYGQGHFVWQASRACAPCLETAPCPYNVACLEPFRSREL
LRSLTLALAGDAGRAVLPDGLQLWRSQVDSLGTVLRLKSGKDPHAERRQRVREYLASFLRLSPPGAVDTPPPVIAGEKTA
YPSGAAGDEGVDQWLCGDADWMLPLERYR
>Mature_428_residues
AAFLVLQAARFGDVVQTGRLLHGLAARGQVHLAVDESLVALARLLYPFAQIHGLHLHGCDENGILQKNRPVLAQWRHENF
STVYNCNFSGLTAALCRIFEPEQVQGYRPAPGGIWRSPWARMAFRLSGRRVLSPLNLVDFWAFFGPDPLRPQQVNPEAAP
GGQGLGVVLAGRESRRSLPIPLLADVVRTTFSAMGGPRVLLFGTAAEQPAARRLLRLLPAKMQDRVEDLSGKTGWPGLVT
AVQGLDAVITPDTGTMHLAARLGVPVLAFFLSSALAHETGPYGQGHFVWQASRACAPCLETAPCPYNVACLEPFRSRELL
RSLTLALAGDAGRAVLPDGLQLWRSQVDSLGTVLRLKSGKDPHAERRQRVREYLASFLRLSPPGAVDTPPPVIAGEKTAY
PSGAAGDEGVDQWLCGDADWMLPLERYR

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 46630; Mature: 46499

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAFLVLQAARFGDVVQTGRLLHGLAARGQVHLAVDESLVALARLLYPFAQIHGLHLHGC
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCEEECC
DENGILQKNRPVLAQWRHENFSTVYNCNFSGLTAALCRIFEPEQVQGYRPAPGGIWRSPW
CCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHH
ARMAFRLSGRRVLSPLNLVDFWAFFGPDPLRPQQVNPEAAPGGQGLGVVLAGRESRRSLP
HHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
IPLLADVVRTTFSAMGGPRVLLFGTAAEQPAARRLLRLLPAKMQDRVEDLSGKTGWPGLV
CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHH
TAVQGLDAVITPDTGTMHLAARLGVPVLAFFLSSALAHETGPYGQGHFVWQASRACAPCL
HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHH
ETAPCPYNVACLEPFRSRELLRSLTLALAGDAGRAVLPDGLQLWRSQVDSLGTVLRLKSG
HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCC
KDPHAERRQRVREYLASFLRLSPPGAVDTPPPVIAGEKTAYPSGAAGDEGVDQWLCGDAD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
WMLPLERYR
CCCCHHHCC
>Mature Secondary Structure 
AAFLVLQAARFGDVVQTGRLLHGLAARGQVHLAVDESLVALARLLYPFAQIHGLHLHGC
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCEEECC
DENGILQKNRPVLAQWRHENFSTVYNCNFSGLTAALCRIFEPEQVQGYRPAPGGIWRSPW
CCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHH
ARMAFRLSGRRVLSPLNLVDFWAFFGPDPLRPQQVNPEAAPGGQGLGVVLAGRESRRSLP
HHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
IPLLADVVRTTFSAMGGPRVLLFGTAAEQPAARRLLRLLPAKMQDRVEDLSGKTGWPGLV
CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHH
TAVQGLDAVITPDTGTMHLAARLGVPVLAFFLSSALAHETGPYGQGHFVWQASRACAPCL
HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHH
ETAPCPYNVACLEPFRSRELLRSLTLALAGDAGRAVLPDGLQLWRSQVDSLGTVLRLKSG
HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCC
KDPHAERRQRVREYLASFLRLSPPGAVDTPPPVIAGEKTAYPSGAAGDEGVDQWLCGDAD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
WMLPLERYR
CCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA