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The map label for this gene is ccsA [H]

Identifier: 220904233

GI number: 220904233

Start: 1119711

End: 1120538

Strand: Reverse

Name: ccsA [H]

Synonym: Ddes_0960

Alternate gene names: 220904233

Gene position: 1120538-1119711 (Counterclockwise)

Preceding gene: 220904234

Following gene: 220904232

Centisome position: 39.0

GC content: 55.56

Gene sequence:

>828_bases
ATGATCTCCCCTGAATTTTCCACCGGCGTCACGCTGCTGCTCTACGGCCTTGCCAGCGTGTCCGGCATAGTCGGCATGGT
AGCGCGCAGCCCTTTCTGGCGAAAACTTGGCTGCTGGCTGGCGGGCGCGGGCTTTATTTTTCAGACCATCTCTCTGGCCA
CAGGCTTTCACAAGGCCCTGCCCGGCGGGCTGAGCCTTGGCGCATACCTGCAGCTTATGGCCTGGTTTGTGGTTTTATGC
GGGCTTGTGGCCTGGGGCAAGCTCCGGCAGGAGGCCCCGCTTATCTTCGCCGCGCCTCTGGGGCTTATGCTTTTTGCCAT
GTCGGCCCCGTACCTCGAAGCAGTGGTACAGGTTCCGCCTTCGCTCAAGGCGCCTTTTTACGCCCTGCACATAGGCACAC
TTTTTCTGAGCCTGGCCCTGTTGGCCCTGGCTTTTGCGGCCGGAGCGCTTTTTATTTTTCTGGAGGCGCGCATCAAGAGC
AAGCAATACATGAAGGGCTTCTGGCAGGATATGCCCGCCCTCACCATGCTTGACAAAATCAATGCCTTCACTACGGTTGT
GGCCTACCCTCTTTATACTCTGGGCATAATTTCAGGCCTTGTATGGGCCAAACCCGTATTTGGCGCGACTGTTACGGGCG
ACCCCAAGGAAGTGATCAGCATCGTCATATGGATGCTGTTTTCTGCTCTGTTCAACAACCGGATCACCAAGGGGTGGAGA
GGCCGAAAACCGGCACGACTGGCTGTTTTTATTTTTATTTTGTGTCTTTTTTCAATCATTGTGGTGAATACCTTTATGGA
GACGCACCACGCATTCATCCGGCGCTGA

Upstream 100 bases:

>100_bases
CTGCAGCAATGGCTGGAGGAAAAGGAAATGGAAAACTGCCGCCAGTGGCTGTTGGCGGAATTGCCAACGGAACTGCACGC
TCATATAGCGGAGTTACTTT

Downstream 100 bases:

>100_bases
CTTGGGCATGAACTATGGACTGTGATATCTTTCTTGTGGGCCTGAATCACCGCACCGCCGGAGTGGATGTGCGCGAACGC
TTCGCCCTGGCCAATCATTG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MISPEFSTGVTLLLYGLASVSGIVGMVARSPFWRKLGCWLAGAGFIFQTISLATGFHKALPGGLSLGAYLQLMAWFVVLC
GLVAWGKLRQEAPLIFAAPLGLMLFAMSAPYLEAVVQVPPSLKAPFYALHIGTLFLSLALLALAFAAGALFIFLEARIKS
KQYMKGFWQDMPALTMLDKINAFTTVVAYPLYTLGIISGLVWAKPVFGATVTGDPKEVISIVIWMLFSALFNNRITKGWR
GRKPARLAVFIFILCLFSIIVVNTFMETHHAFIRR

Sequences:

>Translated_275_residues
MISPEFSTGVTLLLYGLASVSGIVGMVARSPFWRKLGCWLAGAGFIFQTISLATGFHKALPGGLSLGAYLQLMAWFVVLC
GLVAWGKLRQEAPLIFAAPLGLMLFAMSAPYLEAVVQVPPSLKAPFYALHIGTLFLSLALLALAFAAGALFIFLEARIKS
KQYMKGFWQDMPALTMLDKINAFTTVVAYPLYTLGIISGLVWAKPVFGATVTGDPKEVISIVIWMLFSALFNNRITKGWR
GRKPARLAVFIFILCLFSIIVVNTFMETHHAFIRR
>Mature_275_residues
MISPEFSTGVTLLLYGLASVSGIVGMVARSPFWRKLGCWLAGAGFIFQTISLATGFHKALPGGLSLGAYLQLMAWFVVLC
GLVAWGKLRQEAPLIFAAPLGLMLFAMSAPYLEAVVQVPPSLKAPFYALHIGTLFLSLALLALAFAAGALFIFLEARIKS
KQYMKGFWQDMPALTMLDKINAFTTVVAYPLYTLGIISGLVWAKPVFGATVTGDPKEVISIVIWMLFSALFNNRITKGWR
GRKPARLAVFIFILCLFSIIVVNTFMETHHAFIRR

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30162; Mature: 30162

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA