Click here to switch to the map view.

The map label for this gene is yagA [C]

Identifier: 220904217

GI number: 220904217

Start: 1099415

End: 1100203

Strand: Direct

Name: yagA [C]

Synonym: Ddes_0944

Alternate gene names: 220904217

Gene position: 1099415-1100203 (Clockwise)

Preceding gene: 220904216

Following gene: 220904218

Centisome position: 38.26

GC content: 56.27

Gene sequence:

>789_bases
GTGCGTAAGGCATGCGCCATAGTGCTCATCAGTCGGACGCTGTATGCCTATGCACCGACACCGCGCGACGACACCGACGT
TATCGAGACGCTTATCCGGTTGGCCGACAGCTATCCCAGATACGGATTTGGCAAGCTGTTCAGCCTGCTGCGGCGACAGG
GATACCGGTGGAACCACAAGCGGGTTCATCGCATCTACCGTCAACTGAAGCTGCATCTACGGCGTAAAGGGAAGAAGCGA
CTGCCAACACGTAACCCACAGCCCTTGGCCGTTCCACCACAGGCCAACTGCTGCTGGTCAGTGGACTTCATGCATGACTC
GCTCTCCAGCGGACAGCGGTTCCGTACGTTCAACGTGGAGGATGATTACAGCCGGGAATGCCTCGCCATTGAGGTAGACA
CCAGCCTCCCCGCAGCCCGGATATTACGGGTTCTGGACAGGGTGGCGGCATGGCGAGGGTATCCGGAAAAGCTGAGAATG
GACAACGGGCCGGAACTGATCTCGATCCAGATGGCTGAGTGGGCTGAGGCGCATGGAGTGGAGCTGGAGTTCATCCAACC
GGGCAAGCCTACCCAAAACTCGTATGTGGAACGATTTAACAGGACGTATCGGACGGAGGTTCTTGACTTCTACCTGTTCA
GCAGCTTCGCGGAAGTTAAGGAAATCACAGCGAACTGGCTGAAGCAGTACAACGAAGAACGGCCCCATGAGTCCTTGGGC
AACATTCCTCCGGCTGAGTATTTGGAAATCAATTCACCCCAGAAAGTCTCTACCTTCGGGTGGCACTAA

Upstream 100 bases:

>100_bases
TTGAGCACGAGGTCTTGAAGGACATCATAGCAAAAAAGCTCTGAGGCCAACCGAGAAGCGGGAGATCGTCGACTACGCTC
GCGATGAGTTCGGGCTGAGC

Downstream 100 bases:

>100_bases
CTTGGGGAGGTTTACACTCCCATAAGTGATGCAGGTGGCGATGCTGCAAGAGCTGCCGGGCAGGTCTGCCGGCATGGTTG
TGGGGTCATGAAATATCCGG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRRQGYRWNHKRVHRIYRQLKLHLRRKGKKR
LPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSFAEVKEITANWLKQYNEERPHESLG
NIPPAEYLEINSPQKVSTFGWH

Sequences:

>Translated_262_residues
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRRQGYRWNHKRVHRIYRQLKLHLRRKGKKR
LPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSFAEVKEITANWLKQYNEERPHESLG
NIPPAEYLEINSPQKVSTFGWH
>Mature_262_residues
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRRQGYRWNHKRVHRIYRQLKLHLRRKGKKR
LPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSFAEVKEITANWLKQYNEERPHESLG
NIPPAEYLEINSPQKVSTFGWH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=272, Percent_Identity=26.1029411764706, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790724, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789424, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789224, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788305, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787669, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786558, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 30751; Mature: 30751

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRRQGYRWNHK
CCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHH
RVHRIYRQLKLHLRRKGKKRLPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEHHHHHHHHCCCCCEEEECCC
DDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRMDNGPELISIQMAEWAEAHGV
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEHHHHHHHHCC
ELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSFAEVKEITANWLKQYNEERPHESLG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
NIPPAEYLEINSPQKVSTFGWH
CCCCHHEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFGKLFSLLRRQGYRWNHK
CCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHH
RVHRIYRQLKLHLRRKGKKRLPTRNPQPLAVPPQANCCWSVDFMHDSLSSGQRFRTFNVE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEHHHHHHHHCCCCCEEEECCC
DDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRMDNGPELISIQMAEWAEAHGV
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEHHHHHHHHCC
ELEFIQPGKPTQNSYVERFNRTYRTEVLDFYLFSSFAEVKEITANWLKQYNEERPHESLG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
NIPPAEYLEINSPQKVSTFGWH
CCCCHHEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]