| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220904093
Identifier: 220904093
GI number: 220904093
Start: 958455
End: 959144
Strand: Reverse
Name: 220904093
Synonym: Ddes_0819
Alternate gene names: NA
Gene position: 959144-958455 (Counterclockwise)
Preceding gene: 220904094
Following gene: 220904092
Centisome position: 33.38
GC content: 58.99
Gene sequence:
>690_bases ATGCCAGAAGAAACAGACTTTACGAAAACCCTGCACCGCCTTATGCAGGCCATGAATGCTTCCAATGATGCAGAACTGGC CCGCGCCCTGGGTATTACCCCGCAGTCCATCAGCGGCGCACGCAAGCGCGGTGAAGTGCCGCCCGCCTGGGTACAGGCCA GCGCCGCTGCAACCGGAGTGAATGCCCACTGGCTGTTTTTCGGCAGTGGGCCAATGCGGCTTCCCGAAGCTGCCGAAGGC GAATTGCCGTCCATGCATGGCGATTGCGAAGCGGATCTTATACATGTTCCCCTGGCTGAAGCCCGTCTTTCTGCGGGTAC GGGCAGCCTGGAAGTCAGCGAGCGTAGTGAAGACAGCTACGCCTTCAGGGGCGACTTTTTACGCCGCAAGGGCAATCCCC GGCGCATGGTGCTCATGCGCGTCTCCGGCGACAGCATGGTTCCGGAAATTTTTGACAATGACCTTGTGCTGCTGGACAAG GGGCAAACTGAAATCAGCCCGGGTCGCCTTTATGCCGTGGGCTTTGAAGACGCCATCTATATAAAGCGCATTGACAAGGT TCCCGGCAAAATTATCCTGCATAGCGTCAATCCCGCCTACCCCCCGGTAAGCCTGGACCTGCGCGGCGACCTTGCCGACC AGTTCAGGGTTATCGGCCGAGTGCTCTGGTCAGGCCGCGAATACCGTTAG
Upstream 100 bases:
>100_bases CGGTATTTCAAACAAAAACCGCCTCCCATATGAACGGAGCGAACCGGGGCCGCCGCATGCACACCCATCAGGGAAGCAAT GCCGGCCAGCGAGGTACGCC
Downstream 100 bases:
>100_bases GGGTTTTCACATCTGAAATGCCCGCGGGATGTACGCACAAAGCCTGCCGCAAAACAGATACCGGCCGTTGCCGCCGCAAG CCACGGTCCCAGGCGATAAA
Product: putative phage repressor
Products: NA
Alternate protein names: Transcriptional Regulator; Peptidase; S24 Family Peptidase; Prophage Transcriptional Regulator; C Repressor; Transcriptional Activator-Regulator PrtR/CI Repressor; Transcriptional Regulator Cro/CI Family Phage Origin; XRE Family Transcriptional Regulator; Prophage MuSo1 Transcriptional Regulator Cro/CI Family; CI Repressor; Prophage; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Repressor; Transciptional Regulator; Transcriptional Regulator Cro/CI Family; Phage-Like Repressor
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MPEETDFTKTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPAWVQASAAATGVNAHWLFFGSGPMRLPEAAEG ELPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSYAFRGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDK GQTEISPGRLYAVGFEDAIYIKRIDKVPGKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWSGREYR
Sequences:
>Translated_229_residues MPEETDFTKTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPAWVQASAAATGVNAHWLFFGSGPMRLPEAAEG ELPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSYAFRGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDK GQTEISPGRLYAVGFEDAIYIKRIDKVPGKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWSGREYR >Mature_228_residues PEETDFTKTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPAWVQASAAATGVNAHWLFFGSGPMRLPEAAEGE LPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSYAFRGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDKG QTEISPGRLYAVGFEDAIYIKRIDKVPGKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWSGREYR
Specific function: Unknown
COG id: COG2932
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25189; Mature: 25058
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEETDFTKTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPAWVQASAAATGV CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCCHHHCCCCCHHHHHHHHHHCCC NAHWLFFGSGPMRLPEAAEGELPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSY CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCEEECCCCCCCE AFRGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDKGQTEISPGRLYAVGFEDAIY EHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCEEEEECCCCCCCCCEEEEECCCCEEE IKRIDKVPGKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWSGREYR EEHHHCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PEETDFTKTLHRLMQAMNASNDAELARALGITPQSISGARKRGEVPPAWVQASAAATGV CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCCHHHCCCCCHHHHHHHHHHCCC NAHWLFFGSGPMRLPEAAEGELPSMHGDCEADLIHVPLAEARLSAGTGSLEVSERSEDSY CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCEEECCCCCCCE AFRGDFLRRKGNPRRMVLMRVSGDSMVPEIFDNDLVLLDKGQTEISPGRLYAVGFEDAIY EHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCEEEEECCCCCCCCCEEEEECCCCEEE IKRIDKVPGKIILHSVNPAYPPVSLDLRGDLADQFRVIGRVLWSGREYR EEHHHCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA