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The map label for this gene is yvrC [H]

Identifier: 220904072

GI number: 220904072

Start: 934843

End: 935763

Strand: Direct

Name: yvrC [H]

Synonym: Ddes_0798

Alternate gene names: 220904072

Gene position: 934843-935763 (Clockwise)

Preceding gene: 220904071

Following gene: 220904073

Centisome position: 32.53

GC content: 60.15

Gene sequence:

>921_bases
TTGCAAGCAGAGCCAGCATCCGTACCGCACCAGAAAAACAGCACAACGCCTGCCGATACCGGCCATAGTGTCGCCAATGG
CGCCCCTGATGACGTCGATACTCCCATAATGGTCAGTGACGATACCGGGCACGTGGTGCGTCTGCAGCAACCCGCCCGGC
GGGTGATAGCCCTGTACGGAGCCTTTAACGAACTTTTACTGGCCCTTGGGGCCGGGGATGTTCTGGCGGCCCGCACCGTG
GCTGATGCCGCAGTGCCGGGGCTTGAGCATCTGCCCGCCATCGGAACGCACATGCGCCCCAATGCGGAACTTGTGGTGCG
TCAGTCGCCCGATCTGGTCATTCAGCTTGCGGGCCGCAACGAGGCGCTTTTGCAGACGGAAAATCTGCGTGCTCTGGGGC
TTGATGTGCTTGTTTTTGAAATGAATTCCTTTGAGCAGATGTTTGCCGTGCTGCAAAAACTCGGCCGTCTCACAGGGCGC
GAGAGCGAGGCTTCTGCCCTTGTGAAGGCATGGCGGGAGCGTCTCGCGGCCCTTGAAGCCCGCTATGCGGATATGGAGCC
GGTGAGTGTTTTTTACGAGGTACGCTATCCCAACCTGCTGGGAGCGGGGCGCGGCGGCATCGTCAATGACATGATACGCC
GTGCGGGCGGGCGCAACGTCATAGCTGACGAAAAAAAACTGGTGCGCTTTAACGAAGAAGCCCTGCTGGCGGCAGATCCG
GATGTTTATATCATGCAGCGAGGCCCTATGAATCCTGAGCCACAGCCGTTGGAGCAGCGCCAGCACTACAAAAGCATGCG
CGCTGTTCGTGAGGGCAGGGTACTTGTGGTGGATGAAGAGCGGTTTGCCCGTCCCGGCCCGCGCGCTGTGGACGCTGCCG
AAGAACTGGGGCGGTTTTTGCATTTCCGGTCAGCCCCCTGA

Upstream 100 bases:

>100_bases
GCGGACTCTTGCAACGGCGCTGCTTCCTTTGCTGCTGACCCTGACGGTGCATCTGATCCCGGCTCAGGTTTTTGCCGCTG
ATACTGCTCAGCCCGCGGCT

Downstream 100 bases:

>100_bases
ATTTTTCATAAACAATGCTGATGACACGACAAGAGAGCAGACCATGACAGGAGTTTTGTACGGCGTGGGCGTAGGGCCTG
GCGCACCGGACCTGCTGACG

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MQAEPASVPHQKNSTTPADTGHSVANGAPDDVDTPIMVSDDTGHVVRLQQPARRVIALYGAFNELLLALGAGDVLAARTV
ADAAVPGLEHLPAIGTHMRPNAELVVRQSPDLVIQLAGRNEALLQTENLRALGLDVLVFEMNSFEQMFAVLQKLGRLTGR
ESEASALVKAWRERLAALEARYADMEPVSVFYEVRYPNLLGAGRGGIVNDMIRRAGGRNVIADEKKLVRFNEEALLAADP
DVYIMQRGPMNPEPQPLEQRQHYKSMRAVREGRVLVVDEERFARPGPRAVDAAEELGRFLHFRSAP

Sequences:

>Translated_306_residues
MQAEPASVPHQKNSTTPADTGHSVANGAPDDVDTPIMVSDDTGHVVRLQQPARRVIALYGAFNELLLALGAGDVLAARTV
ADAAVPGLEHLPAIGTHMRPNAELVVRQSPDLVIQLAGRNEALLQTENLRALGLDVLVFEMNSFEQMFAVLQKLGRLTGR
ESEASALVKAWRERLAALEARYADMEPVSVFYEVRYPNLLGAGRGGIVNDMIRRAGGRNVIADEKKLVRFNEEALLAADP
DVYIMQRGPMNPEPQPLEQRQHYKSMRAVREGRVLVVDEERFARPGPRAVDAAEELGRFLHFRSAP
>Mature_306_residues
MQAEPASVPHQKNSTTPADTGHSVANGAPDDVDTPIMVSDDTGHVVRLQQPARRVIALYGAFNELLLALGAGDVLAARTV
ADAAVPGLEHLPAIGTHMRPNAELVVRQSPDLVIQLAGRNEALLQTENLRALGLDVLVFEMNSFEQMFAVLQKLGRLTGR
ESEASALVKAWRERLAALEARYADMEPVSVFYEVRYPNLLGAGRGGIVNDMIRRAGGRNVIADEKKLVRFNEEALLAADP
DVYIMQRGPMNPEPQPLEQRQHYKSMRAVREGRVLVVDEERFARPGPRAVDAAEELGRFLHFRSAP

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=251, Percent_Identity=27.0916334661355, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33592; Mature: 33592

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAEPASVPHQKNSTTPADTGHSVANGAPDDVDTPIMVSDDTGHVVRLQQPARRVIALYG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHH
AFNELLLALGAGDVLAARTVADAAVPGLEHLPAIGTHMRPNAELVVRQSPDLVIQLAGRN
HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEECCCCEEEEECCCC
EALLQTENLRALGLDVLVFEMNSFEQMFAVLQKLGRLTGRESEASALVKAWRERLAALEA
CEEEEECCCHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RYADMEPVSVFYEVRYPNLLGAGRGGIVNDMIRRAGGRNVIADEKKLVRFNEEALLAADP
HHCCCCCEEEEEEECCCCEECCCCCCHHHHHHHHCCCCCCCCCCHHHHEECCCEEEECCC
DVYIMQRGPMNPEPQPLEQRQHYKSMRAVREGRVLVVDEERFARPGPRAVDAAEELGRFL
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHH
HFRSAP
HCCCCC
>Mature Secondary Structure
MQAEPASVPHQKNSTTPADTGHSVANGAPDDVDTPIMVSDDTGHVVRLQQPARRVIALYG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHH
AFNELLLALGAGDVLAARTVADAAVPGLEHLPAIGTHMRPNAELVVRQSPDLVIQLAGRN
HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEECCCCEEEEECCCC
EALLQTENLRALGLDVLVFEMNSFEQMFAVLQKLGRLTGRESEASALVKAWRERLAALEA
CEEEEECCCHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RYADMEPVSVFYEVRYPNLLGAGRGGIVNDMIRRAGGRNVIADEKKLVRFNEEALLAADP
HHCCCCCEEEEEEECCCCEECCCCCCHHHHHHHHCCCCCCCCCCHHHHEECCCEEEECCC
DVYIMQRGPMNPEPQPLEQRQHYKSMRAVREGRVLVVDEERFARPGPRAVDAAEELGRFL
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHH
HFRSAP
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]