| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220904020
Identifier: 220904020
GI number: 220904020
Start: 879550
End: 882000
Strand: Direct
Name: 220904020
Synonym: Ddes_0746
Alternate gene names: NA
Gene position: 879550-882000 (Clockwise)
Preceding gene: 220904019
Following gene: 220904022
Centisome position: 30.61
GC content: 61.69
Gene sequence:
>2451_bases ATGCCCCATCAGAGCCTGGAAAACAGCTCTTCGGAGCAGACAGCGAACCATCCTGCCTGCAATGCCGGCGGCGGCTGCAA TGATGCCGTTGCCCACACTGCCGAACATTCCTGCGCAACCTCCACTGCCCACAGCGTGGCCCTCCGCGAAAGGGGGCATC CGCTGGCGCTGCCGCGCGCCGTGCATCTGGGGTTGCCCCCCGGGCCGGACGTGGCGGGCTACTGGTTGCGGGGCTTTTTC TGGGGAGTTGTCACGCTTGTGCTGGCTTTCGGCCTGCGTATGCTGGAATGGCCCTGCTGGCAGGACCCCGAGTTTCGCCT GGGCAGCCAGTGGCTGCTCGCCACGCACGACGCCTATCACTGGGTGGCCGGGGCTGAGGGCATTGGCCTGGCCGTGGGGC ATCCCATGGCCGAAATGCTCCGCTGGATGGCGGACGCCCTCGGAACCTATCCGGCGGCGGTGGCCTTCTGGTTTCCGGCG GTGCTGGCAAGCTTTGTGGCCCTCATTGTCTACGCCTGGGTATGGGCGCTGGGCAGCATGGAGGCGGGTGTGGCCGCGGG GCTGCTTACCTCGCTGGCGCCGGGCTTTTTGGCCCGGACATTACTTGGCTATTATGACACCGACCTTGTTACGCTGTTTT TCCCCCTGCTTATGACCCTTGCCCCGGCAAGCTGGGCCATGCGCTACATGCTGCTGCCCCAGATGGTGCTGCGCCGCATG GCTATCGGCGCAGGCATCATGACCGCACGGCGTCTGTTCAGCAGGGGGCTGCCCGAAGACAAGCTGGTCCGCCAGCTTGG GCAGGGCGAACACCTGGGTAATCCTTTACGTTGGCAATGGGTTGTGCTGCTGGGTTGCTCTGGCGTCATTTCGTGGTGGA CCCAGGAATGGCATTCGGTTTTTCCGTATCTTATCCGCTATAACGTCATCCTGCTGGCTTTCATGAGCCTTATCATGGCC CCTCGCGGGCGCCGGGCCTTGCTGCTTCTGGGCAGTCTTGCCTACGCGCTGCCCACACTGACAGGGCCTGTGGGGCTTGT TTTCAGTCTGCTGCTTCTGCTGGCGGGTACGCGCCCCGGCCTGAAGGCACGGCGTGTGCTTTGCCGTCCGGGGGTGCTTT CCCTGCTGTGGGTGGGCGTGGCCTTTCTGTTGGTGCAGGGTGAAATTCTCACCACCCTCACCAACCACGTCAATGCCTAC CTGAAGCATGCGGGCGATGCTAAAAGCACGGGAGAAGGGGCGGTGCTCATGTATCCCTCGGTGGCCCAGTCCATCATTGA GGTGCAGGACCTGAGCTTTGCCGCGCTGTTTCCCTATTTTCATCCCTGGATGGAAGCGTCCATTGTTGGCCTTCTTGGCT TTGTGGTGGTGATGGTGCGCCGGCCAGGCGCGCTGTTTCTGCTGCCGCTGGCCGCCTTGGGGCTTTTGAGCACCAAGCTT GGCGGGCGCATGGTCATGTTCGGCGCGCCTGTGGTGGCGGTGGGGCTGACCCTGCCGCTGTTCTGGACGTGGCAGCGGCT TTTGCGCACCAGCCTGCGGGGTTCCGTGGCGGGCCTGCTGACGTCGGCGGTGCTCATCGCCCTTATGGTGGCCCCCTTTG TGGACATGATACCTGCCATGTCGCAAGGGCCGATGATCAACCGGCGCCATGCAGAAGCCCTTACCCGCGCGCGCACGATG ACGCCCGAGGACTCCATGCTCTGGCTGTGGTGGGACTGGGGCTACGCCGCGCACTATTTCGCGCACCGTGCCACCATAGC TGATGGCGCACAGCACGCCGGGCCATCGCTTTATCTGCCCGCTGCCGTGTTCGCCACCGACAACGCCCGTTTTGCGCGCC AGCTTATCCGGTACACGGCGCAGCGCGGCAATGAGCCTGGCAATGTTTTTGAAGGGCTGGACGGAACGTCGGCCCAGGTG CTTATGGACCGGTTGCGGTCTGATGAAACGCCACTTATTGAGGCCAGAGGACGGCTTTTTGTGGTGGTGAGTTTTGAGAT GCTGCGCCTGGGCTTCTGGATAAGCAATTTCGGCAACTGGAATTTTATTACCCATTCGGGCGAGGGCGGAGCACTTTCCA TTGTGCCGCAGGAGCTTGCCTACCGGCTTGACTCAGGCGAAGTGCGCCTTGAGGGCAGCACCAGCGCCATTTATGCGTCG TCCATCAATGTATTTGAAGAAACGGGTGTTACCCGGCGCAATTATGTGCAGGAATGGTTTGACGCCCACCCCGATGCGTC GCCGCAGGAGCAGCAGGATTTTCTGTCCCGACGGCGCAACGTCAATTTTCTTTTCAACAGGATAACGGACGAAAAGCTGG CCATGGACGAGGGGCTGTACAATTCCCTTATGGTGCAGCTGCTGGTGGGCGACCCGCAAAGCCCGCGTTTTTCACCATAC TTCAAGCTGGTGTACGATAATGTTTTCGCCAGGATTTACGAGGTATTGTAA
Upstream 100 bases:
>100_bases GCGGCGGGCAGCGGGCGCTGGTTCTGGGCGCTCAGCCCGGACCTGCCGGAAAACGACCTCAAAACCTTCAGTGCCGGACA GCATGACGACGGAGCATAAT
Downstream 100 bases:
>100_bases AAAAGCAGCTTGCGGTATCCGGAAACGTCAATGGTGGTAGGGCACTTTGCGCAGGATGCATTCGGCGCGGTATATCTGCT CAAGCAGGACCACGCGGGCC
Product: Oligosaccharyl transferase STT3 subunit
Products: NA
Alternate protein names: Oligosaccharide Transferase N-Glycosylate Proteins; Iron Chelatin ABC Transporter Permease Protein
Number of amino acids: Translated: 816; Mature: 815
Protein sequence:
>816_residues MPHQSLENSSSEQTANHPACNAGGGCNDAVAHTAEHSCATSTAHSVALRERGHPLALPRAVHLGLPPGPDVAGYWLRGFF WGVVTLVLAFGLRMLEWPCWQDPEFRLGSQWLLATHDAYHWVAGAEGIGLAVGHPMAEMLRWMADALGTYPAAVAFWFPA VLASFVALIVYAWVWALGSMEAGVAAGLLTSLAPGFLARTLLGYYDTDLVTLFFPLLMTLAPASWAMRYMLLPQMVLRRM AIGAGIMTARRLFSRGLPEDKLVRQLGQGEHLGNPLRWQWVVLLGCSGVISWWTQEWHSVFPYLIRYNVILLAFMSLIMA PRGRRALLLLGSLAYALPTLTGPVGLVFSLLLLLAGTRPGLKARRVLCRPGVLSLLWVGVAFLLVQGEILTTLTNHVNAY LKHAGDAKSTGEGAVLMYPSVAQSIIEVQDLSFAALFPYFHPWMEASIVGLLGFVVVMVRRPGALFLLPLAALGLLSTKL GGRMVMFGAPVVAVGLTLPLFWTWQRLLRTSLRGSVAGLLTSAVLIALMVAPFVDMIPAMSQGPMINRRHAEALTRARTM TPEDSMLWLWWDWGYAAHYFAHRATIADGAQHAGPSLYLPAAVFATDNARFARQLIRYTAQRGNEPGNVFEGLDGTSAQV LMDRLRSDETPLIEARGRLFVVVSFEMLRLGFWISNFGNWNFITHSGEGGALSIVPQELAYRLDSGEVRLEGSTSAIYAS SINVFEETGVTRRNYVQEWFDAHPDASPQEQQDFLSRRRNVNFLFNRITDEKLAMDEGLYNSLMVQLLVGDPQSPRFSPY FKLVYDNVFARIYEVL
Sequences:
>Translated_816_residues MPHQSLENSSSEQTANHPACNAGGGCNDAVAHTAEHSCATSTAHSVALRERGHPLALPRAVHLGLPPGPDVAGYWLRGFF WGVVTLVLAFGLRMLEWPCWQDPEFRLGSQWLLATHDAYHWVAGAEGIGLAVGHPMAEMLRWMADALGTYPAAVAFWFPA VLASFVALIVYAWVWALGSMEAGVAAGLLTSLAPGFLARTLLGYYDTDLVTLFFPLLMTLAPASWAMRYMLLPQMVLRRM AIGAGIMTARRLFSRGLPEDKLVRQLGQGEHLGNPLRWQWVVLLGCSGVISWWTQEWHSVFPYLIRYNVILLAFMSLIMA PRGRRALLLLGSLAYALPTLTGPVGLVFSLLLLLAGTRPGLKARRVLCRPGVLSLLWVGVAFLLVQGEILTTLTNHVNAY LKHAGDAKSTGEGAVLMYPSVAQSIIEVQDLSFAALFPYFHPWMEASIVGLLGFVVVMVRRPGALFLLPLAALGLLSTKL GGRMVMFGAPVVAVGLTLPLFWTWQRLLRTSLRGSVAGLLTSAVLIALMVAPFVDMIPAMSQGPMINRRHAEALTRARTM TPEDSMLWLWWDWGYAAHYFAHRATIADGAQHAGPSLYLPAAVFATDNARFARQLIRYTAQRGNEPGNVFEGLDGTSAQV LMDRLRSDETPLIEARGRLFVVVSFEMLRLGFWISNFGNWNFITHSGEGGALSIVPQELAYRLDSGEVRLEGSTSAIYAS SINVFEETGVTRRNYVQEWFDAHPDASPQEQQDFLSRRRNVNFLFNRITDEKLAMDEGLYNSLMVQLLVGDPQSPRFSPY FKLVYDNVFARIYEVL >Mature_815_residues PHQSLENSSSEQTANHPACNAGGGCNDAVAHTAEHSCATSTAHSVALRERGHPLALPRAVHLGLPPGPDVAGYWLRGFFW GVVTLVLAFGLRMLEWPCWQDPEFRLGSQWLLATHDAYHWVAGAEGIGLAVGHPMAEMLRWMADALGTYPAAVAFWFPAV LASFVALIVYAWVWALGSMEAGVAAGLLTSLAPGFLARTLLGYYDTDLVTLFFPLLMTLAPASWAMRYMLLPQMVLRRMA IGAGIMTARRLFSRGLPEDKLVRQLGQGEHLGNPLRWQWVVLLGCSGVISWWTQEWHSVFPYLIRYNVILLAFMSLIMAP RGRRALLLLGSLAYALPTLTGPVGLVFSLLLLLAGTRPGLKARRVLCRPGVLSLLWVGVAFLLVQGEILTTLTNHVNAYL KHAGDAKSTGEGAVLMYPSVAQSIIEVQDLSFAALFPYFHPWMEASIVGLLGFVVVMVRRPGALFLLPLAALGLLSTKLG GRMVMFGAPVVAVGLTLPLFWTWQRLLRTSLRGSVAGLLTSAVLIALMVAPFVDMIPAMSQGPMINRRHAEALTRARTMT PEDSMLWLWWDWGYAAHYFAHRATIADGAQHAGPSLYLPAAVFATDNARFARQLIRYTAQRGNEPGNVFEGLDGTSAQVL MDRLRSDETPLIEARGRLFVVVSFEMLRLGFWISNFGNWNFITHSGEGGALSIVPQELAYRLDSGEVRLEGSTSAIYASS INVFEETGVTRRNYVQEWFDAHPDASPQEQQDFLSRRRNVNFLFNRITDEKLAMDEGLYNSLMVQLLVGDPQSPRFSPYF KLVYDNVFARIYEVL
Specific function: Unknown
COG id: COG1287
COG function: function code R; Uncharacterized membrane protein, required for N-linked glycosylation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90133; Mature: 90002
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHQSLENSSSEQTANHPACNAGGGCNDAVAHTAEHSCATSTAHSVALRERGHPLALPRA CCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE VHLGLPPGPDVAGYWLRGFFWGVVTLVLAFGLRMLEWPCWQDPEFRLGSQWLLATHDAYH EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH WVAGAEGIGLAVGHPMAEMLRWMADALGTYPAAVAFWFPAVLASFVALIVYAWVWALGSM HCCCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EAGVAAGLLTSLAPGFLARTLLGYYDTDLVTLFFPLLMTLAPASWAMRYMLLPQMVLRRM HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH AIGAGIMTARRLFSRGLPEDKLVRQLGQGEHLGNPLRWQWVVLLGCSGVISWWTQEWHSV HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH FPYLIRYNVILLAFMSLIMAPRGRRALLLLGSLAYALPTLTGPVGLVFSLLLLLAGTRPG HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC LKARRVLCRPGVLSLLWVGVAFLLVQGEILTTLTNHVNAYLKHAGDAKSTGEGAVLMYPS HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH VAQSIIEVQDLSFAALFPYFHPWMEASIVGLLGFVVVMVRRPGALFLLPLAALGLLSTKL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC GGRMVMFGAPVVAVGLTLPLFWTWQRLLRTSLRGSVAGLLTSAVLIALMVAPFVDMIPAM CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SQGPMINRRHAEALTRARTMTPEDSMLWLWWDWGYAAHYFAHRATIADGAQHAGPSLYLP CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCHHHCCCCEEEC AAVFATDNARFARQLIRYTAQRGNEPGNVFEGLDGTSAQVLMDRLRSDETPLIEARGRLF EEEEECCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCEEECCCCEE VVVSFEMLRLGFWISNFGNWNFITHSGEGGALSIVPQELAYRLDSGEVRLEGSTSAIYAS EEEEHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEHHHHHHHCCCCCEEECCCCCEEEEH SINVFEETGVTRRNYVQEWFDAHPDASPQEQQDFLSRRRNVNFLFNRITDEKLAMDEGLY HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHH NSLMVQLLVGDPQSPRFSPYFKLVYDNVFARIYEVL HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC >Mature Secondary Structure PHQSLENSSSEQTANHPACNAGGGCNDAVAHTAEHSCATSTAHSVALRERGHPLALPRA CCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE VHLGLPPGPDVAGYWLRGFFWGVVTLVLAFGLRMLEWPCWQDPEFRLGSQWLLATHDAYH EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH WVAGAEGIGLAVGHPMAEMLRWMADALGTYPAAVAFWFPAVLASFVALIVYAWVWALGSM HCCCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH EAGVAAGLLTSLAPGFLARTLLGYYDTDLVTLFFPLLMTLAPASWAMRYMLLPQMVLRRM HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH AIGAGIMTARRLFSRGLPEDKLVRQLGQGEHLGNPLRWQWVVLLGCSGVISWWTQEWHSV HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH FPYLIRYNVILLAFMSLIMAPRGRRALLLLGSLAYALPTLTGPVGLVFSLLLLLAGTRPG HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC LKARRVLCRPGVLSLLWVGVAFLLVQGEILTTLTNHVNAYLKHAGDAKSTGEGAVLMYPS HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH VAQSIIEVQDLSFAALFPYFHPWMEASIVGLLGFVVVMVRRPGALFLLPLAALGLLSTKL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC GGRMVMFGAPVVAVGLTLPLFWTWQRLLRTSLRGSVAGLLTSAVLIALMVAPFVDMIPAM CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SQGPMINRRHAEALTRARTMTPEDSMLWLWWDWGYAAHYFAHRATIADGAQHAGPSLYLP CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCHHHCCCCEEEC AAVFATDNARFARQLIRYTAQRGNEPGNVFEGLDGTSAQVLMDRLRSDETPLIEARGRLF EEEEECCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCEEECCCCEE VVVSFEMLRLGFWISNFGNWNFITHSGEGGALSIVPQELAYRLDSGEVRLEGSTSAIYAS EEEEHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEHHHHHHHCCCCCEEECCCCCEEEEH SINVFEETGVTRRNYVQEWFDAHPDASPQEQQDFLSRRRNVNFLFNRITDEKLAMDEGLY HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHH NSLMVQLLVGDPQSPRFSPYFKLVYDNVFARIYEVL HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA