BacMap

Definition	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome.
Accession	NC_011883
Length	2,873,437

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The map label for this gene is cbpA [H]

Identifier: 220903856

GI number: 220903856

Start: 701425

End: 702399

Strand: Reverse

Name: cbpA [H]

Synonym: Ddes_0580

Alternate gene names: 220903856

Gene position: 702399-701425 (Counterclockwise)

Preceding gene: 220903857

Following gene: 220903855

Centisome position: 24.44

GC content: 60.62

Gene sequence:

>975_bases
ATGTCAGTATCTTACAAAGATTATTACAAACTTCTGGGAGTGGAGCGCACGGCCAAGACCGAGGATATTTCCAAGGCCTA
CAAAAAGCTGGCGCGCCAGTACCACCCCGACCTGAATCCCGGCGACAAGCAGGCAGAAGAAAAATTTAAAGAAATCAACG
AGGCCCACGAGGTTCTCAAAGATGCTGAAAAGCGCAGGCTTTACGACCAGCTCGGCCCCAACTGGCAGCACGGCCAGCAG
TTTCAGGGCGAACCAGGTTTTGAAAACGTGCACTTTACCTTCAATGGCAAAAACTTTGACGGCTCGGGCTTTTCAGACTT
TTTCGAAACCCTGTTCGGAGGCGCGCGCGGCGCGCAATTCGGCGGGCAGGCCGGGCCTTTTGGCGGGCAGGGCGGCGGCC
GCACCCAGTTCGGTCCCGACCCATTCGGCGGCTTTTCTTCCCGCCCGCGACGGGGCCGTGACGTTGAGGCCGAGTTGCCC
CTGACGCTTGAAGAGGTGCAGAAAGGCGGCAGCCGCACTGTCTCGCTGCAGGGACCGCAGGGGCCGAAAACGCTGGAAGT
CAACGTGCCCGCCGGTATCCGCGAAGGTGCAAAGCTGCGTCTGGCAGGCCAGGGCGATCCCGCCCCCGGTGGCACACCAG
GTGACCTCTTTTTGCGGGTGCGCTATCTGCCGCATGCCACGTTCAGGGTGGACGGCGAAAACCTGCAATGCGATGTGGCG
CTGGCTCCCTGGGAGGCAGTGCTCGGCGGCAAGGTGGAAGTACCCACCCTTGAAGGCAACGTTGAAATGCAGATTCCCGC
CGGGTCCAGCTCGGGGCGCAAATTTCGCCTGCGCGGCAAAGGGCTGGGTGCATCCGGAAAACGCGGCGACCTGCTTGCCA
GGGTCATGATCAAAACCCCGGCGCAACTGTCCGAAGATGAGCGCGAACTCTGGCAAAAGCTGGCCGAAACATCAGCATTC
AAGGCCCGCGCATAG

Upstream 100 bases:

>100_bases
TCTTGCATATTGAACCACAGCCACAAAAAGGCCTGCGGTTCCGAAGCGCGCCCGCACACGGGCTGCGCTCGACAGTACGA
TTCGCACGGGGGAGCGCAGA

Downstream 100 bases:

>100_bases
CAACTGGTGGAGGTTTTAGCATGAGCATGACACCCAAGCATCCCACCCTGCCCGCTCCTTCCACGGTTATGGTCTGGGAA
GAATTTGTTCAGGTGACGGG

Product: chaperone DnaJ domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSVSYKDYYKLLGVERTAKTEDISKAYKKLARQYHPDLNPGDKQAEEKFKEINEAHEVLKDAEKRRLYDQLGPNWQHGQQ
FQGEPGFENVHFTFNGKNFDGSGFSDFFETLFGGARGAQFGGQAGPFGGQGGGRTQFGPDPFGGFSSRPRRGRDVEAELP
LTLEEVQKGGSRTVSLQGPQGPKTLEVNVPAGIREGAKLRLAGQGDPAPGGTPGDLFLRVRYLPHATFRVDGENLQCDVA
LAPWEAVLGGKVEVPTLEGNVEMQIPAGSSSGRKFRLRGKGLGASGKRGDLLARVMIKTPAQLSEDERELWQKLAETSAF
KARA

Sequences:

>Translated_324_residues
MSVSYKDYYKLLGVERTAKTEDISKAYKKLARQYHPDLNPGDKQAEEKFKEINEAHEVLKDAEKRRLYDQLGPNWQHGQQ
FQGEPGFENVHFTFNGKNFDGSGFSDFFETLFGGARGAQFGGQAGPFGGQGGGRTQFGPDPFGGFSSRPRRGRDVEAELP
LTLEEVQKGGSRTVSLQGPQGPKTLEVNVPAGIREGAKLRLAGQGDPAPGGTPGDLFLRVRYLPHATFRVDGENLQCDVA
LAPWEAVLGGKVEVPTLEGNVEMQIPAGSSSGRKFRLRGKGLGASGKRGDLLARVMIKTPAQLSEDERELWQKLAETSAF
KARA
>Mature_323_residues
SVSYKDYYKLLGVERTAKTEDISKAYKKLARQYHPDLNPGDKQAEEKFKEINEAHEVLKDAEKRRLYDQLGPNWQHGQQF
QGEPGFENVHFTFNGKNFDGSGFSDFFETLFGGARGAQFGGQAGPFGGQGGGRTQFGPDPFGGFSSRPRRGRDVEAELPL
TLEEVQKGGSRTVSLQGPQGPKTLEVNVPAGIREGAKLRLAGQGDPAPGGTPGDLFLRVRYLPHATFRVDGENLQCDVAL
APWEAVLGGKVEVPTLEGNVEMQIPAGSSSGRKFRLRGKGLGASGKRGDLLARVMIKTPAQLSEDERELWQKLAETSAFK
ARA

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI201862518, Length=364, Percent_Identity=31.043956043956, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI56549115, Length=359, Percent_Identity=31.1977715877437, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI201862587, Length=361, Percent_Identity=31.0249307479224, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI6631085, Length=339, Percent_Identity=31.2684365781711, Blast_Score=148, Evalue=5e-36,
Organism=Homo sapiens, GI5453690, Length=347, Percent_Identity=29.3948126801153, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI7706495, Length=342, Percent_Identity=29.8245614035088, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI205360840, Length=354, Percent_Identity=27.4011299435028, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI205360838, Length=354, Percent_Identity=27.4011299435028, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI39204547, Length=342, Percent_Identity=26.6081871345029, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI17388799, Length=109, Percent_Identity=46.7889908256881, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI45504382, Length=72, Percent_Identity=50, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=60, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI23503241, Length=74, Percent_Identity=54.0540540540541, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI4504511, Length=170, Percent_Identity=34.7058823529412, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI47777312, Length=132, Percent_Identity=37.8787878787879, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI27151736, Length=120, Percent_Identity=42.5, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI21553335, Length=67, Percent_Identity=56.7164179104478, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI194328758, Length=175, Percent_Identity=33.1428571428571, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI88501736, Length=120, Percent_Identity=42.5, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI194328760, Length=175, Percent_Identity=33.1428571428571, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI29126218, Length=86, Percent_Identity=46.5116279069767, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI56687498, Length=66, Percent_Identity=57.5757575757576, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI24308127, Length=67, Percent_Identity=49.2537313432836, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI194306642, Length=69, Percent_Identity=53.6231884057971, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI194306640, Length=69, Percent_Identity=53.6231884057971, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9558755, Length=72, Percent_Identity=48.6111111111111, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27735107, Length=88, Percent_Identity=42.0454545454545, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI5031741, Length=71, Percent_Identity=49.2957746478873, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787235, Length=334, Percent_Identity=37.125748502994, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786197, Length=138, Percent_Identity=43.4782608695652, Blast_Score=122, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17534355, Length=340, Percent_Identity=31.1764705882353, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17554644, Length=72, Percent_Identity=52.7777777777778, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17553096, Length=142, Percent_Identity=31.6901408450704, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI212645553, Length=67, Percent_Identity=50.7462686567164, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17553098, Length=140, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115532378, Length=70, Percent_Identity=54.2857142857143, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17568643, Length=65, Percent_Identity=50.7692307692308, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17507263, Length=347, Percent_Identity=25.9365994236311, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17554900, Length=67, Percent_Identity=44.7761194029851, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=170, Percent_Identity=32.9411764705882, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6323870, Length=69, Percent_Identity=43.4782608695652, Blast_Score=76, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6323813, Length=158, Percent_Identity=37.3417721518987, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322194, Length=66, Percent_Identity=50, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324321, Length=64, Percent_Identity=51.5625, Blast_Score=66, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322388, Length=69, Percent_Identity=49.2753623188406, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324252, Length=64, Percent_Identity=46.875, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24658562, Length=327, Percent_Identity=35.1681957186544, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24658555, Length=327, Percent_Identity=35.1681957186544, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI85726398, Length=359, Percent_Identity=30.3621169916435, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI45549272, Length=371, Percent_Identity=29.3800539083558, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45552813, Length=371, Percent_Identity=29.3800539083558, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI18858081, Length=357, Percent_Identity=28.8515406162465, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45552811, Length=371, Percent_Identity=29.3800539083558, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI19920464, Length=349, Percent_Identity=24.9283667621776, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17737735, Length=95, Percent_Identity=44.2105263157895, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24668523, Length=95, Percent_Identity=44.2105263157895, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28574723, Length=95, Percent_Identity=44.2105263157895, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24668492, Length=81, Percent_Identity=50.6172839506173, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24654066, Length=69, Percent_Identity=49.2753623188406, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24654070, Length=69, Percent_Identity=49.2753623188406, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24654068, Length=69, Percent_Identity=49.2753623188406, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24654072, Length=69, Percent_Identity=49.2753623188406, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=53.125, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24646562, Length=63, Percent_Identity=52.3809523809524, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24646560, Length=63, Percent_Identity=52.3809523809524, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24646558, Length=63, Percent_Identity=52.3809523809524, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24646556, Length=63, Percent_Identity=52.3809523809524, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357547, Length=63, Percent_Identity=52.3809523809524, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=50.7692307692308, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=50.7692307692308, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24651439, Length=65, Percent_Identity=50.7692307692308, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21358273, Length=71, Percent_Identity=56.3380281690141, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI20129487, Length=168, Percent_Identity=35.1190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584014, Length=168, Percent_Identity=35.1190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17648033, Length=106, Percent_Identity=38.6792452830189, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584630, Length=106, Percent_Identity=38.6792452830189, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355911, Length=88, Percent_Identity=45.4545454545455, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 35338; Mature: 35207

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSYKDYYKLLGVERTAKTEDISKAYKKLARQYHPDLNPGDKQAEEKFKEINEAHEVLK
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
DAEKRRLYDQLGPNWQHGQQFQGEPGFENVHFTFNGKNFDGSGFSDFFETLFGGARGAQF
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
GGQAGPFGGQGGGRTQFGPDPFGGFSSRPRRGRDVEAELPLTLEEVQKGGSRTVSLQGPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCCCEEEEEECCC
GPKTLEVNVPAGIREGAKLRLAGQGDPAPGGTPGDLFLRVRYLPHATFRVDGENLQCDVA
CCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHEEEEEEECCCEEEEECCCCEEEEEE
LAPWEAVLGGKVEVPTLEGNVEMQIPAGSSSGRKFRLRGKGLGASGKRGDLLARVMIKTP
ECCHHHHHCCEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC
AQLSEDERELWQKLAETSAFKARA
HHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVSYKDYYKLLGVERTAKTEDISKAYKKLARQYHPDLNPGDKQAEEKFKEINEAHEVLK
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
DAEKRRLYDQLGPNWQHGQQFQGEPGFENVHFTFNGKNFDGSGFSDFFETLFGGARGAQF
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
GGQAGPFGGQGGGRTQFGPDPFGGFSSRPRRGRDVEAELPLTLEEVQKGGSRTVSLQGPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCCCEEEEEECCC
GPKTLEVNVPAGIREGAKLRLAGQGDPAPGGTPGDLFLRVRYLPHATFRVDGENLQCDVA
CCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHEEEEEEECCCEEEEECCCCEEEEEE
LAPWEAVLGGKVEVPTLEGNVEMQIPAGSSSGRKFRLRGKGLGASGKRGDLLARVMIKTP
ECCHHHHHCCEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC
AQLSEDERELWQKLAETSAFKARA
HHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA